Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0384 ATGGATCCTTCTAGTGGACAACAGAACCAGCAGCAAATGGGAAATAATAATAACAATCAGTCACTAGAAAGCATGATGTTGGGTTGCACAAAACAAGAACAACAACAACAAGAGAAGAAGCCAAGGCCACAACCAGAACAAGCATTGAAATGTCCAAGATGTGATTCAACAAACACAAAGTTCTGTTACTACAACAACTACAGTCTCTCACAGCCAAGGTACTTCTGCAAATCTTGCAGAAGGTACTGGACAAAAGGAGGAACATTGAGGAATGTTCCAGTAGGTGGAGGCTGCAGAAAGAACAAAAGATCATGTTCTTCTTCATCAAAGAGAGCTCAAGATCAATTACCCTTTAACCCAGATCATAACCCTCTCATGAATTCTCTCCCTCCATTGTCATATGACTCTGAATTCACACTTGCATTGGCTAGGCTCCAAAAACAAACAGGTGGTGTGCATCTTGGTCTTGATGACCACCATGATCTCTCAATGTTGGTGAACCACACTAACACTAACACCAACACCACAACACAACAACAACAACAAGGATTCTTGGATGCACTTAGGAGCAATGGATTCAACAGCAACACCATGCATAGTGATTTGTACTATGGTGGAAATGGGGACATGGGTGAGGTTTATAATGAGATTATGCTTCCTTATGAGCAAGAAATGAGTGTTGAAACAACTCAAGCAGTTACTGTCACAACCACAAAGCAAGAACTCTGCAATGTTAGTTATAATTGCAATAGTAATAACAATAATAATAATAAGGTTTTGTGGGGTTTTCCATGGCAGATCAATGGAGATACAAACATGCTTGGAGATATTGATTTATCAAGAGCAAGTTGGAATGGTAATGGTCCTCTCACTACTCCATTATCTTGGCATGGACTTCTCAATACTCCCCTAATGTAG 918 0.4009 MDPSSGQQNQQQMGNNNNNQSLESMMLGCTKQEQQQQEKKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSCSSSSKRAQDQLPFNPDHNPLMNSLPPLSYDSEFTLALARLQKQTGGVHLGLDDHHDLSMLVNHTNTNTNTTTQQQQQGFLDALRSNGFNSNTMHSDLYYGGNGDMGEVYNEIMLPYEQEMSVETTQAVTVTTTKQELCNVSYNCNSNNNNNNKVLWGFPWQINGDTNMLGDIDLSRASWNGNGPLTTPLSWHGLLNTPLM* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0384 305 Pfam Dof domain, zinc finger 47 103 IPR003851 GO:0003677|GO:0006355
Ahy13g0384 305 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 16 304 - -
Ahy13g0384 305 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Ahy13g0384 305 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 304 IPR045174 GO:0003700|GO:0006355
Ahy13g0384 305 MobiDBLite consensus disorder prediction 98 121 - -
Ahy13g0384 305 MobiDBLite consensus disorder prediction 1 34 - -
Ahy13g0384 305 MobiDBLite consensus disorder prediction 1 50 - -
Ahy13g0384 305 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0384 Ahy-Chr13 3884185 3885597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0384 47 305 C2C2-Dof Transcription Factor Family AT2G28510 42.599 5.29e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy13g0384 zf-Dof 6.30E-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0384 - - gmx:778106 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0384 13 3884185 3885597 Ahy13g0384 13 3884185 3885597 ECH
Ahy18g0457 18 4010813 4012484 Ahy13g0384 13 3884185 3885597 PCT
Ahy8g1263 8 28190651 28192241 Ahy13g0384 13 3884185 3885597 PCT
Ahy13g0384 13 3884185 3885597 Ahy18g0457 18 4010813 4012484 PCT
Ahy13g0384 13 3884185 3885597 Ahy8g1263 8 28190651 28192241 PCT