Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0380 ATGGACTCCGACGACGACCTCCACCGCCTCTTATCGGAGCAACGCCGTGAGCTCGCCACGGCTGAGGCCATCGACTCCGATCTCGAATTCGCATACCGACTACAGCTTGAGGAAGCTCTCGCCGCCTCCCTCGCTTCCCTCTCCTCCTCTTCCTCCCCGCAACCACCACCACCACCACCAACCAACGATGACAAAAACGACCCTGTTTTGAACGCCACAACACTCCAGGCGCAAGAACTCGCGAGGGTTGAGCAAGAACTTCGCGACCGCCACCTCAGCGAGGCTGAGGCCCGCAAAACGAGTCTCGATCTCAACCGTCGCGTCCACGATCAGAAAGTCGCCATCGAAATTCTTAGAATCCCCGAAGATGATTGGGTCGAGTGGGGCGATAACTTCCAGAAACCCTTCTTCTTCGGGGAGGGTTCTTCTTCTTCTTCTTCGTCGACGAAGAAGAATAATACTCGGAAGGGCAATTTGGAAATGGACGAAGACGATGATGGTGCGGTTTTTAGGGTTTACTTTAAGGGTTTGGTGAGCAATGACGAGAAGTTGAAGAACGGAGAGAAGGTTCTGTTGGCTGGGATTGGGGTTGCGATTTGTGATCCTGAAGATAACTTGATTCTTGAGGTGCGAAAGCCACTCATTGGGTGTGGAACGAGCAAGATTGCTGCTGATCTTAAGGCTTTGATCGAAGGCTTGAATGCTGCGTTCGCTTTGGACTTGAAGCGTGTTCGGTTCTTCTGCGATTACTATCCAATTTTCCAATTCGTTAGGGGAAGATGGCCTGTGAAACAGCGGAAGGTTGCTGTGCTAGTCAATCAGGTGAATCTGCTACGGAGAAAATTTACTTACTGTGCTCCAATGCTTCTAGCAAGACATGATGTCAAGTATGCATTTAAGCTTGCAAGAGATGCAATCGTTTCTCAATTGACAGCGCCTGCGGACTCTAACGGTATGAAGAATCTGAATGAAACTTGTGTCATATGTTTGGAGGATACCGATGGCAATAACTTTTTTTCGGTTGATGGCTGTCAACACCGGTATTGCTTTTCTTGCATGAGACAACATGTGGAGGTGAAGTTGCTTCATGGGATGGTGCCAAAATGCCCTCATGAAGGATGCAATTCCGAGCTTCAAGTTGACAGCTGCAAGAAATTCTTGACAAATAAATTAATTGAGACCATGCAACTGCGAAAGTTGGAAGCTTCAATTCCAGTTACTGAGAAAGTTTATTGTCCCTATCCACGATGCTCTGCTTTGATGTCAAAAACTGAGCTTTTTGAGTACTCCAAAAATCTTATTGGTGATTTTGAACAATCAGGACCTAAGAAATGTATAAAATGCCATGGTCTCTTCTGTTTTACTTGCAAGGTCCCTTGGCATAGTGGCATGAAATGCTATGATTACAAAAGGTTGAATCCTAACCCTCCTGCTGAAGATTTGAAGCTAAAGTTTCTGGCATCCAGGAGTCTATGGCGCCAGTGCGTGAAATGTAACCATATGATTGAACTTGCTGAAGGCTGCTATCACATGACTTGCAGATGTGGCTATGAATTCTGCTACAACTGTGGAGCCGAGTGGAAGAACAAGAAAGCAACGTGTTCTTGCCCACTTTGGGCTGAGGACAATATTTGGTTTGAGGATCATGCGAGGGACTCGGACGAAGAAGAAGAAGAAGAGGAGGAGGAAGACGACGAATTTTTTGACTCTGATTATTCAGATGATGAATATTACTAA 1737 0.4663 MDSDDDLHRLLSEQRRELATAEAIDSDLEFAYRLQLEEALAASLASLSSSSSPQPPPPPPTNDDKNDPVLNATTLQAQELARVEQELRDRHLSEAEARKTSLDLNRRVHDQKVAIEILRIPEDDWVEWGDNFQKPFFFGEGSSSSSSSTKKNNTRKGNLEMDEDDDGAVFRVYFKGLVSNDEKLKNGEKVLLAGIGVAICDPEDNLILEVRKPLIGCGTSKIAADLKALIEGLNAAFALDLKRVRFFCDYYPIFQFVRGRWPVKQRKVAVLVNQVNLLRRKFTYCAPMLLARHDVKYAFKLARDAIVSQLTAPADSNGMKNLNETCVICLEDTDGNNFFSVDGCQHRYCFSCMRQHVEVKLLHGMVPKCPHEGCNSELQVDSCKKFLTNKLIETMQLRKLEASIPVTEKVYCPYPRCSALMSKTELFEYSKNLIGDFEQSGPKKCIKCHGLFCFTCKVPWHSGMKCYDYKRLNPNPPAEDLKLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKNKKATCSCPLWAEDNIWFEDHARDSDEEEEEEEEEDDEFFDSDYSDDEYY* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0380 578 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 32 547 - -
Ahy13g0380 578 Gene3D - 464 574 - -
Ahy13g0380 578 MobiDBLite consensus disorder prediction 43 69 - -
Ahy13g0380 578 Pfam IBR domain, a half RING-finger domain 408 466 IPR002867 -
Ahy13g0380 578 Pfam IBR domain, a half RING-finger domain 485 534 IPR002867 -
Ahy13g0380 578 MobiDBLite consensus disorder prediction 139 160 - -
Ahy13g0380 578 ProSitePatterns Zinc finger RING-type signature. 344 353 IPR017907 -
Ahy13g0380 578 ProSiteProfiles TRIAD supradomain profile. 322 546 IPR044066 -
Ahy13g0380 578 ProSiteProfiles Zinc finger RING-type profile. 326 370 IPR001841 -
Ahy13g0380 578 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 547 IPR031127 GO:0004842|GO:0016567
Ahy13g0380 578 SUPERFAMILY RING/U-box 480 543 - -
Ahy13g0380 578 MobiDBLite consensus disorder prediction 551 578 - -
Ahy13g0380 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 405 IPR013083 -
Ahy13g0380 578 SUPERFAMILY RING/U-box 324 406 - -
Ahy13g0380 578 Gene3D - 170 312 IPR036397 GO:0003676
Ahy13g0380 578 Pfam Reverse transcriptase-like 192 305 IPR002156 GO:0003676|GO:0004523
Ahy13g0380 578 SMART ibrneu5 393 466 IPR002867 -
Ahy13g0380 578 SMART ibrneu5 479 536 IPR002867 -
Ahy13g0380 578 MobiDBLite consensus disorder prediction 139 154 - -
Ahy13g0380 578 MobiDBLite consensus disorder prediction 550 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0380 Ahy-Chr13 3814258 3817479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0380 169 525 C3H Transcription Factor Family AT2G19610 35.440 7.90e-64 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0380 - - ahf:112736554 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0380 13 3814258 3817479 Ahy13g0380 13 3814258 3817479 ECH