Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0370 ATGGATTTGGCATCCAGTTGCAAGGAAAAATTGGCATATTTTCGAATAAAAGAGCTCAAAGATGTCCTCACACAGTTGGGCCTTTCAAAGCAGGGAAAAAAGCAGGATCTTGTTGATCGGATACTATCTATGCTCTCAGATGATCAAGTATCCAAAATGTTTGCCAAGAAGAATGCTATTGGAAAAGAACAGGTGGCAAAATTAGTGGACGACACATATAGAAAAATGCAGATATCTGGTGCCACTGACCTTGCATCAAAGGGACAGGGAGCCTCAGATAGCAGTAATGTGAAAATTAAAGGTGAAAAAGATGATTCCTTTCAATCAGATACAAAGATTCGCTGTATCTGCGGAAGTACATTGGATACAGATCCATTGGTCAAGTGTGACGATCCACGATGCCATGTGTGGCAGCACATAAATTGTGTTATTGTTCCAGAAAAACCTATGGAAGGTGTCCTGCCAGTACCTGATAAATTTTATTGTGAACTCTGTAGACTCAGCCGTGCAGACCCGTTTTGGGTTTCAATGGGACACCCCTTGTTTCCTGTGAAGTTGAGCATAACAAGTAATCCAACTGATGGATCCAACCCAATGCAGAGTGTGGATAGAACATTTCAATTGACAAGAGCAGACAAGGACTTGGTATCAAAACCAGAATTTGATATTCAGGCTTGGTGTATGCTTCTGAACGACAAGGTTTCATTCAGGATGCAGTGGCCACAGTATACAGACCTACAGGTCAATGGTGTTCCTGTTCGTGCAATTAACAGACCTGGTTCACAATTACTTGGGGCTAATGGGCGTGATGATGGTCCAATTATCACGCCATATACAAAAGACGGAATTAATAAGATTACCTTAACAGGATGTGATGCTCGCATTTTTTGTGTGGGGGTCCGTATTGTTAAAAGGCGCAGCATGCAACAGATCCTAAACATAATTCCAAAGGAACCTGAAGGTGAACAATTTGATGATGCTCTTGCACGAGTTCGTCGTTGTGTTGGAGGTGGAAATGAAGATGATAATGCTGACAGTGACAGTGATTTGGAAGTGGTTTCAGACACTTTTAGCATCAGCCTTCGTTGTCCGATGAGTGGTTCAAGGATGAAGATTGCAGGTAGATTCAAGCCTTGTATTCACATGGGATGTTTTGATCTTGAAGTTTTTGTGGAAATGAACCAAAGGTCAAGGAAGTGGCAGTGCCCAATATGTCTCAAAAACTATGCGTTGGAGAATATCATTATTGATCCCTATTTCAATCGCATCACTTCTCGGATGACAAACTGTGGTGAGGAGGTTACAGATATTGAGGTGAAGCCTGATGGTTCTTGGCGTGTTAAGACAAAGAGTGAAAGTGAGCGCCTGGAGTTGGGGAATCTTGCACAATGGCACTTCCCTGACGGGTCCCTCTGTGTTTCGGCTGATGGAGAAGGCAGAAGAGTGGAAGCTTTGAAGCTGGTCAAACAGGAGGGTGTTTCAGA 1484 0.4292 MDLASSCKEKLAYFRIKELKDVLTQLGLSKQGKKQDLVDRILSMLSDDQVSKMFAKKNAIGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSNVKIKGEKDDSFQSDTKIRCICGSTLDTDPLVKCDDPRCHVWQHINCVIVPEKPMEGVLPVPDKFYCELCRLSRADPFWVSMGHPLFPVKLSITSNPTDGSNPMQSVDRTFQLTRADKDLVSKPEFDIQAWCMLLNDKVSFRMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTKDGINKITLTGCDARIFCVGVRIVKRRSMQQILNIIPKEPEGEQFDDALARVRRCVGGGNEDDNADSDSDLEVVSDTFSISLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSRMTNCGEEVTDIEVKPDGSWRVKTKSESERLELGNLAQWHFPDGSLCVSADGEGRRVEALKLVKQEGVS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0370 494 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Ahy13g0370 494 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Ahy13g0370 494 Gene3D SAP domain 1 64 IPR036361 -
Ahy13g0370 494 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Ahy13g0370 494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Ahy13g0370 494 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 494 - -
Ahy13g0370 494 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Ahy13g0370 494 SUPERFAMILY SAP domain 1 64 IPR036361 -
Ahy13g0370 494 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 494 - -
Ahy13g0370 494 SUPERFAMILY FYVE/PHD zinc finger 105 169 IPR011011 -
Ahy13g0370 494 MobiDBLite consensus disorder prediction 84 103 - -
Ahy13g0370 494 SMART PHD_3 114 166 IPR001965 -
Ahy13g0370 494 Pfam SAP domain 14 42 IPR003034 -
Ahy13g0370 494 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Ahy13g0370 494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 447 IPR013083 -
Ahy13g0370 494 SMART sap_9 11 45 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0370 Ahy-Chr13 3692454 3699460 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ahy13g0370 zf-MIZ 2.00E-19 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0370 - - ahf:112736540 1011.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0370 13 3692454 3699460 Ahy13g0370 13 3692454 3699460 ECH
Ahy18g0468 18 4152842 4161386 Ahy13g0370 13 3692454 3699460 PCT
Ahy8g1275 8 28403012 28411405 Ahy13g0370 13 3692454 3699460 PCT
Ahy13g0370 13 3692454 3699460 Ahy18g0468 18 4152842 4161386 PCT
Ahy13g0370 13 3692454 3699460 Ahy8g1275 8 28403012 28411405 PCT