Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0352 ATGAGTTCTCAGGAAAAGTCTCTGACTTTGGGTGGATATGAACAACAACATGCTCATGCTGATGCAGCAGCTTCTTGCAGAAGAACAGTTTCTCTGCCAGCTCAAAAGGTTGATGATCCAATGGGGATAACCGAAGAAACCATGCATGTTCCTCCAAGGAAGCGACAGAATCTTCTCCTAGAAATTCCCTCAAGAACTCCAGAAGAATGCTCCCAAGATTATGTGGCAATCAAAATGCCAATGACACCAAGTCCCACTCCCACCCCAAAGAGAGTGAACTTTCTCATATCTTCTCGCTCGGTCGATGCTCCTATGCATACTTCTCCAGGGCCTTCAGCTTCAAAAGGCAGATCATCCATAAGAAGCATTCTACCGAAATTGAGCTTCAGGTATCGGCCACCAACGGATACTGAAAAGGGTACTACTTCAGCACAAGAAGGTTCCTCTTCAGGTCATCGCGAAAAGCCATCAATCTCAAGATCACTATCCCTTAGTAAGATATTTACTCCTAGGATTAAAAGAACATCATCATTACCACTAGGAGAAATGGGACATTCAAATCCAGAATCTGCTCATGGTGGAAGTGTCGGTGGTCCTCTAAATAAAGGAGAGCCGCAGCGTAAGATAGCTCGCTCGCTTTCAGTGCCTGTCAATAACAAAGATAAAGGCATAAGGAGGATGGATTCATTTTACCGTATTGTTCCTACCACCCCTCGAGTAAAGGAAGGAAATGCATTGTCATCCACATCCCCAACAAAGAATTCCGAAATTAATGACGCTGATGATGATGACGGAGAAGATATACCTGAAGAAGAGGCTGTGTGTAGGATTTGTCTGGTTGATTTATGTGAAGGAGGTGAAACCTTCAAGTTGGAATGTAGCTGCAAAGGAGAACTTGCTCTGGCTCACCAAGAATGTGCAATTAAATGGTTTAGTATCAAGGGCAACAGAACCTGTGATGTATGCAAGGAAGATGTTCAGAACCTACCTGTCACTTTATTACGGATCCAAAGTGTTCGAGGCCGGAATCCAGGAATAAGTAGGACTCAGCTCGAAGATGTAAACGGATACAGGGTATGGCAGGAAGTTCCGGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGTTATTGGTCACGAAAATGGGAACCGGTGCAATCGCCATATCTCTTCCTTTTTCCTGTGTGCTAGGCCTACTTTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAGTTTGCACTTGTGGTTCTTTTTGCGCATATATTTTACTCCGTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTGGCAACATTCGCCGGTTTCGGTGTCGTTATGAGTGGAAGTTCTATTCTTGTTGAGTTCTTCAGATGGAGAAGAAGATGGCAACAACAACAACAAGGTCCACAACTGATGACACAACCTCGGCCTGCAAATACGCCGCATCCGGTGGTGCCTCCGAACCAGAATCAAACTGTGGAACAAGATCAACAGAACTCAACTCAAAGCTGA 1554 0.4472 MSSQEKSLTLGGYEQQHAHADAAASCRRTVSLPAQKVDDPMGITEETMHVPPRKRQNLLLEIPSRTPEECSQDYVAIKMPMTPSPTPTPKRVNFLISSRSVDAPMHTSPGPSASKGRSSIRSILPKLSFRYRPPTDTEKGTTSAQEGSSSGHREKPSISRSLSLSKIFTPRIKRTSSLPLGEMGHSNPESAHGGSVGGPLNKGEPQRKIARSLSVPVNNKDKGIRRMDSFYRIVPTTPRVKEGNALSSTSPTKNSEINDADDDDGEDIPEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNRTCDVCKEDVQNLPVTLLRIQSVRGRNPGISRTQLEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRWQQQQQGPQLMTQPRPANTPHPVVPPNQNQTVEQDQQNSTQS* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0352 517 Pfam RING-variant domain 275 322 IPR011016 GO:0008270
Ahy13g0352 517 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 45 493 - -
Ahy13g0352 517 MobiDBLite consensus disorder prediction 88 121 - -
Ahy13g0352 517 MobiDBLite consensus disorder prediction 78 214 - -
Ahy13g0352 517 SUPERFAMILY RING/U-box 271 326 - -
Ahy13g0352 517 MobiDBLite consensus disorder prediction 1 65 - -
Ahy13g0352 517 MobiDBLite consensus disorder prediction 241 266 - -
Ahy13g0352 517 ProSiteProfiles Zinc finger RING-CH-type profile. 267 329 IPR011016 GO:0008270
Ahy13g0352 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 330 IPR013083 -
Ahy13g0352 517 MobiDBLite consensus disorder prediction 481 517 - -
Ahy13g0352 517 MobiDBLite consensus disorder prediction 499 517 - -
Ahy13g0352 517 CDD RING_CH-C4HC3_MARCH 275 323 - -
Ahy13g0352 517 SMART ringv_2 274 323 IPR011016 GO:0008270
Ahy13g0352 517 MobiDBLite consensus disorder prediction 135 172 - -
Ahy13g0352 517 PANTHER OS02G0165000 PROTEIN 45 493 - -
Ahy13g0352 517 MobiDBLite consensus disorder prediction 241 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0352 Ahy-Chr13 3542562 3546723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0352 261 329 C3H Transcription Factor Family AT2G37950 45.714 9.73e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0352 - - gmx:100788108 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0352 13 3542562 3546723 Ahy13g0352 13 3542562 3546723 ECH
Ahy18g0481 18 4296684 4299546 Ahy13g0352 13 3542562 3546723 PCT
Ahy8g1288 8 28546444 28549384 Ahy13g0352 13 3542562 3546723 PCT
Ahy13g0352 13 3542562 3546723 Ahy18g0481 18 4296684 4299546 PCT
Ahy13g0352 13 3542562 3546723 Ahy8g1288 8 28546444 28549384 PCT