Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0342 ATGGCTAAAGATGTTGAAGTTGAAGAGCAAAGAGGAGGAGGAGGAGGAGAATACTCAGCAAAAGACTACCATGAACCACCACCAGCACCATTGATTGATGCAGAGGAGCTTACAAAGTGGTCCTTCTATAGAGCACTCATAGCTGAGTTCATAGCAACACTTTTATTCCTTTACATCACTGTCTTGACCATTATTGGTTATAGTAACCAAAGTGATACCACAATCAAGGGTAACACTCAGTGTGATGGTGTTGGAATCTTGGGTATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTATTGCACTGCTGGCATTTCCGGAGGACACATCAACCCTGCAGTGACATTTGGGTTGTTCCTTGGCCGGAAGGTGTCGCTGATAAGGGCACTGTTGTACATAGTGGCACAGTGTGCCGGCGCCATCTGCGGCGCCGGACTGGCCAAGGGATTCCAGAAAGCTTACTTTGATAGGTATGGAGGTGGTGCCAACTACGTTCATCCTGGTTACAACAAAGGAACTGCTTTGGGTGCTGAAATTATTGGCACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCTAAGAGAAACGCCAGAGACTCCCATGTTCCTGTGTTGGCACCACTGCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACAATCCCGGTAACGGGCACCGGCATCAACCCGGCAAGAAGCTTCGGAGCTGCCGTGATTTACAACAAAGACAAAATCTGGGATGACCATTGGATATTCTGGGTTGGACCAATTCTTGGAGCTGCAGCGGCTGCAATCTACCATGAACACATTATTAAAGCATCTGCCATAAAAGCCCTTGGATCCTTCAGGAGCAACCATTAA 876 0.4772 MAKDVEVEEQRGGGGGEYSAKDYHEPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYITVLTIIGYSNQSDTTIKGNTQCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYIVAQCAGAICGAGLAKGFQKAYFDRYGGGANYVHPGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNKDKIWDDHWIFWVGPILGAAAAAIYHEHIIKASAIKALGSFRSNH* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0342 291 CDD MIP 44 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g0342 291 Pfam Major intrinsic protein 36 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g0342 291 MobiDBLite consensus disorder prediction 1 25 - -
Ahy13g0342 291 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 290 IPR034294 -
Ahy13g0342 291 SUPERFAMILY Aquaporin-like 36 277 IPR023271 -
Ahy13g0342 291 PRINTS Major intrinsic protein family signature 179 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g0342 291 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g0342 291 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g0342 291 PRINTS Major intrinsic protein family signature 93 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g0342 291 PRINTS Major intrinsic protein family signature 255 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g0342 291 PRINTS Major intrinsic protein family signature 215 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g0342 291 ProSitePatterns MIP family signature. 111 119 IPR022357 -
Ahy13g0342 291 PANTHER AQUAPORIN PIP2-7 1 290 - -
Ahy13g0342 291 TIGRFAM MIP: MIP family channel proteins 48 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g0342 291 Gene3D Glycerol uptake facilitator protein. 29 291 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0342 Ahy-Chr13 3487357 3489585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0342 1 289 Major Intrinsic Protein MIP AT2G37170 77.163 8.42e-164 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0342 K09872 - gmx:100811119 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0342 13 3487357 3489585 Ahy13g0342 13 3487357 3489585 ECH
Ahy18g0486 18 4380963 4383212 Ahy13g0342 13 3487357 3489585 ECH
Ahy18g0486 18 4380963 4383212 Ahy13g0342 13 3487357 3489585 PCT
Ahy8g1293 8 28585539 28587802 Ahy13g0342 13 3487357 3489585 PCT
Ahy13g0342 13 3487357 3489585 Ahy18g0486 18 4380963 4383212 PCT
Ahy13g0342 13 3487357 3489585 Ahy8g1293 8 28585539 28587802 PCT