Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0333 ATGAAGGAAGGTGAGAAGAGCTTGGATCCGCAGCTATGGCATGCGTGTGCAGGTTCCATGGTTCAGATGCCTCAAGTGAACTCGAAAGTTTTCTACTTTCCACAAGGGCATGCAGAACACGCTCAAACCGCCATTGATCTCTCAACTCCTTCTTTGAGGGTTCCACCACTCATCCCTTGCAGGGTTGCAACAGTGAGATTCATGGCTGACCCTGAAACAGATGAAGTTTTCGCAAAGATAAAGCTTGTTCCACTGAAAAGTTCAGAGCTTGATCAAAACGACAACACCTTGGAGGGTGAAGTTGTTGTGGAGAATCAAGAAAAGCCTGCATCTTTTGCAAAGACTTTGACCCAATCTGATGCTAACAATGGTGGGGGTTTCTCAGTCCCTCGTTACTGTGCAGAAACCATCTTCCCCCGGCTCGATTACTCGGCGGAGCCGCCGGTTCAGACGGTGGTGGCAAAGGATGTTCATGGTGAGCTATGGAAGTTTAGGCATATATATAGAGGTACACCAAGGAGGCACTTGCTTACAACTGGTTGGAGCACTTTTGTTAATCAGAAGAAGCTTGTAGCTGGTGATTCTGTGGTGTTTCTGAGGGCTGAAAATGGTGATCTTTGTGTTGGGATTAGGAGGGCAAAAAGGGGAATTGGAATTGGAATTGGTGGTGGTTGTGAGGGTTCATCTTTGTGGAGTTCAGCTTCTTCTGGTAATGGTAATAGTAATGGAGGGCCTTATGGAGCATTGTCAATGTTCTTGAGAGAGGAGAACAACAAGCTTTTAAGGAATAGTAACGGAAGGTGTTCTTATTCTTCTTCTTCTTCTTCTTCAAGGGTGAGAGCTGAAGATGTTGTGGAAGCTGTGTCAATGGCTGCAAGGAACCAAGCATTTGAGGTTGTGTATTCTCCAAGGGCAAGCACTCCTGAGTTCTGCATTAAGGCTTCTTCTGTGAGTGATGCAATGAGGATCCAATGGTGTTCTGGCATGAGGTTCAAGATGCCCTTTGAGACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGGACTGTTGCTTCCGTTCAGGTTGCTGATCCTATCCGCTGGCCGAATTCGCCTTGGCGAATTCTTCAGGTTACTTGGGATGAGCCTGATTTGCTACAAAATGTGAAGAGAGTTAGTCCATGGTTGGTTGAATTGGTATCAAACATGCCAATCATCAATATCTCGCCATTCTCTCCACCAAGGAAGAAGTTGAGGTTTCCTCAGCACCCAGACTTCCCTCAGGACATTCAGTTCACATCGTTACCAACGTTTCCGGGCAATTATATCGGGCCGAATAGCCCCATGTATTGTTTATCTGAAAACGCTCCCGCAAGCATACAGGGAACCAGGCATGCTCAAATCGGAATATCTCTTTCAGATTTCCACCTCAGCAATAAACTGCAGTTGGGGCTGCTTCCAACTAGTATCCATCGGCTCGATGTTCATAACCGCGACATGACCAACCATGATAAGAGCAAAGAGAGCTTATCATGCTTGCTCACCATGGGAAAATCCAACAAGAGTCTGGAGAATTCTGATAACAATGTTAAGACACACCAGTTTTTGCTTTTTGGTCAGCCTATTCTCACTGAGCAACAAATCTCTCGAACCGGAAAAGACTCGCCGGACGAGACTAAGATCAAAGAGAAGTGCTTCTTAGGTGAAGCTAAATTTGCAGTTTCACAGCACATTCCACCAGGAAAAGCTTCTAATGCTGCCGAGTTTTCGTGGCAAATCGGCTTGGAAACTAGCCATTGCAAGGTTTTCTTGGAATCAGAAGATGTAGGAAGAACCTTAGACCTATCAAGCCTTGGTTCATATGAAGAACTCTATAGAAAACTGGCCAACATGTTTGATATGGAACGATCTGAGATCTTCAACCATGTTCTTTACCGCGACGAAACAAGTGCTGTTAAGAAAATTGGAGAAGAACCCTTCAGTGAATTCATGAAGACAGCAAAAAGATTGACAATTCTTATGGATTCAAGCAGCAAAAATATTAGAAGGGCATGGATTACAGGGAGTCGCAGTGGTGAACATGGAATTGATGCATCAAACAAAACTGGTCCTCTTAGCATATTTGTTTAA 2109 0.4486 MKEGEKSLDPQLWHACAGSMVQMPQVNSKVFYFPQGHAEHAQTAIDLSTPSLRVPPLIPCRVATVRFMADPETDEVFAKIKLVPLKSSELDQNDNTLEGEVVVENQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKRGIGIGIGGGCEGSSLWSSASSGNGNSNGGPYGALSMFLREENNKLLRNSNGRCSYSSSSSSSRVRAEDVVEAVSMAARNQAFEVVYSPRASTPEFCIKASSVSDAMRIQWCSGMRFKMPFETEDSSRISWFMGTVASVQVADPIRWPNSPWRILQVTWDEPDLLQNVKRVSPWLVELVSNMPIINISPFSPPRKKLRFPQHPDFPQDIQFTSLPTFPGNYIGPNSPMYCLSENAPASIQGTRHAQIGISLSDFHLSNKLQLGLLPTSIHRLDVHNRDMTNHDKSKESLSCLLTMGKSNKSLENSDNNVKTHQFLLFGQPILTEQQISRTGKDSPDETKIKEKCFLGEAKFAVSQHIPPGKASNAAEFSWQIGLETSHCKVFLESEDVGRTLDLSSLGSYEELYRKLANMFDMERSEIFNHVLYRDETSAVKKIGEEPFSEFMKTAKRLTILMDSSSKNIRRAWITGSRSGEHGIDASNKTGPLSIFV* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0333 702 Gene3D - 110 214 IPR015300 -
Ahy13g0333 702 SUPERFAMILY DNA-binding pseudobarrel domain 97 214 IPR015300 -
Ahy13g0333 702 CDD B3_DNA 111 212 IPR003340 GO:0003677
Ahy13g0333 702 SMART B3_2 112 214 IPR003340 GO:0003677
Ahy13g0333 702 Pfam Auxin response factor 287 370 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy13g0333 702 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Ahy13g0333 702 PANTHER AUXIN RESPONSE FACTOR 2 679 - -
Ahy13g0333 702 Gene3D - 588 675 - -
Ahy13g0333 702 ProSiteProfiles PB1 domain profile. 590 673 IPR000270 GO:0005515
Ahy13g0333 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 679 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy13g0333 702 Gene3D - 324 397 - -
Ahy13g0333 702 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0333 Ahy-Chr13 3391388 3395119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0333 3 676 B3 DNA Binding Superfamily AT2G28350 58.416 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy13g0333 B3 1.40E-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0333 - - gmx:100814686 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0333 13 3391388 3395119 Ahy13g0333 13 3391388 3395119 ECH
Ahy18g0492 18 4500431 4504490 Ahy13g0333 13 3391388 3395119 ECH
Ahy12g3074 12 120203136 120206994 Ahy13g0333 13 3391388 3395119 ECH
Ahy18g0492 18 4500431 4504490 Ahy13g0333 13 3391388 3395119 PCT
Ahy8g1301 8 28777729 28781811 Ahy13g0333 13 3391388 3395119 PCT
Ahy13g0333 13 3391388 3395119 Ahy18g0492 18 4500431 4504490 PCT
Ahy13g0333 13 3391388 3395119 Ahy8g1301 8 28777729 28781811 PCT