Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0332 ATGAAGGATTGTTGGTTTTTGGACAACAATTTGAATGGGGTATCGGATGAAGCTTTTGATGTGGTGGGGTTTTTTGATTTCCCAATAGAAGATGTGGAAGATGATGCTGTGGAGGAGGATTGGGGTGCTCAGTTTAAACAACTTGAAGAGCCATCTCTTGGTGTGTTTTCGGTATCACCATCCGGACTGAGTGATAAAACTGAGAATGAGAATCCGAAACTTGGGAGGAGTATCTCTACTCCTGTGGCCGATCCTGCTCGACCTACATACGGCAATACTATTCGGAACCAGAATGTCTCTTTTAATGGGAAAAGGGTGCCCAAGTTCCAAACCTACAGCCCTGTGTCTGTCTTTGAAAGCAGTAGTTCCTCCTCGGTCGAGAACTCCAACTTTGATCTACCTGTCATCCCGGTAAAGCGTCCTCGAGGCAAACGCCGGCCTCTCTCAAGCTTCAGCTTGCTATTATCTGTTCCATTCGTCTCTAACTCCCCAAAAGGTGAGGCAAATGATTTATCTGAATCAAATTTACAAACACAAGCTGATGGTAAATTAATAAGCAGTCTCAAAAAGAAGCAGAGGAGTAAGGATCTACCTTTGCTTTCAGATCATACTGAGAAGAAGGGATCTGCATTGCAAGGATCAGTTACCCACCGAAAATGCATGCATTGTGAGGTGACATCTACGCCGCAGTGGAGAGAAGGACCCATGGGTCCAAAGACACTTTGCAATGCTTGTGGGGTTCGGTATAGGTCCGGCCGGCTCTTCCCTGAATACCGGCCTGCAGCTAGCCCTACGTTTGTACCATCATTGCACTCGAACTCTCACAGGAAGGTCATCGAAATGAGGAGCCGAACTGCGACAGAGACTCTTAAGGGTTCTTCTATGTTGGACAAAGTGTTGTGA 903 0.464 MKDCWFLDNNLNGVSDEAFDVVGFFDFPIEDVEDDAVEEDWGAQFKQLEEPSLGVFSVSPSGLSDKTENENPKLGRSISTPVADPARPTYGNTIRNQNVSFNGKRVPKFQTYSPVSVFESSSSSSVENSNFDLPVIPVKRPRGKRRPLSSFSLLLSVPFVSNSPKGEANDLSESNLQTQADGKLISSLKKKQRSKDLPLLSDHTEKKGSALQGSVTHRKCMHCEVTSTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPSLHSNSHRKVIEMRSRTATETLKGSSMLDKVL* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0332 300 Pfam GATA zinc finger 220 253 IPR000679 GO:0006355|GO:0043565
Ahy13g0332 300 SMART GATA_3 214 264 IPR000679 GO:0006355|GO:0043565
Ahy13g0332 300 MobiDBLite consensus disorder prediction 57 76 - -
Ahy13g0332 300 Gene3D - 213 264 IPR013088 GO:0006355|GO:0008270
Ahy13g0332 300 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 23 284 - -
Ahy13g0332 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 277 - -
Ahy13g0332 300 MobiDBLite consensus disorder prediction 57 97 - -
Ahy13g0332 300 PANTHER GATA TRANSCRIPTION FACTOR 23 284 - -
Ahy13g0332 300 CDD ZnF_GATA 219 266 IPR000679 GO:0006355|GO:0043565
Ahy13g0332 300 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355|GO:0043565
Ahy13g0332 300 MobiDBLite consensus disorder prediction 186 213 - -
Ahy13g0332 300 MobiDBLite consensus disorder prediction 186 203 - -
Ahy13g0332 300 ProSiteProfiles GATA-type zinc finger domain profile. 214 250 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0332 Ahy-Chr13 3376973 3380656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0332 20 300 C2C2-Gata Transcription Factor Family AT1G08010 37.762 2.60e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ahy13g0332 GATA 7.20E-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0332 - - aprc:113853859 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0332 13 3376973 3380656 Ahy13g0332 13 3376973 3380656 ECH
Ahy18g0493 18 4511451 4515688 Ahy13g0332 13 3376973 3380656 ECH
Ahy18g0493 18 4511451 4515688 Ahy13g0332 13 3376973 3380656 PCT
Ahy8g1302 8 28796938 28800792 Ahy13g0332 13 3376973 3380656 PCT
Ahy13g0332 13 3376973 3380656 Ahy18g0493 18 4511451 4515688 PCT
Ahy13g0332 13 3376973 3380656 Ahy8g1302 8 28796938 28800792 PCT