Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0312 ATGAGTAGTTTAAGGCCTGAATTGCATGTTGCACAGCAAATTCGGCGTGACAAGCTCAGATTCCAGAATCTACAACAAGATTTCCCAACAAACCTTGAAGAACAAATTTCACTTCACCAACAAGATTCCAGAATCTACAACATGCTTGATGATGTTGAACAACCACCACCACAACAACAATCTCTCTATTCATCACATTATTATGCTTCTTCATCCCCACAACAATGTATGATTAATAACAACTGTTACTATTACTCGGGTAATTTTGCAACACTAAGTCCTAGTGTGGCTAATAACCATAACCATATAGTGACGGTTGCACATTATTCTTCTTCACAGAATAGTAGTAGTAGTAATAATAATGCAGCTTTACAAGATATTCTGAATCTTAAGCCAGCTTCTAATAACTCAGAAATGGCTTCATCACTCATGCATCATCCTTATGTTATTGACAATTATACCCCTACTGCTGCTGCTGGTGGTGGTTGGAATAATCATAATAATAATCATAATCAGGGGTTGTCCTTATCACTCTCATCATCATCACCATTATCACATCATCATAGTCAAAATGTTCATGTGAAATCTTCTACTACTACTACTAATCCAATGATGATGAAGCCATCAAGTTACTATTACAGAAACAGTGTTGGTCCACTAGGTCCATTCACGGGATATGCAACAATCTTGAAGAGTTCAAGGTTCTTGAAGCCATGTCAAAAGTTGTTAGATGAATATTGCCGCCGCCATTCTGCTCCATCAACATCAGAATGGCCTTCTACTACTACTTGTGCTGATGATGATGATGATGATCGAAGTGATCATGGGTTACTTGTTTCTGAAAAGGGAGGACGTAGTAGTAATAATAATAATAATAATAATGTTGCAGCAGCAGGTTCTTCTTCATCTTCTTCCATGTTCCATGCCCCTTCTTCTTCTCCTTCTCGGCCAGAGTGCCAAAAGAATAAGGCCAAACTACTGTTCATGCAAGAAGAGGTTACAAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTGGTTTCATCCTTTGAGACAGTGGCAGGCCTCAATTCTGCAACCCCATACGTTTCCTTGGCGCTCAAGTTAGTATCAAAGAACTTCAAGTCCCTAAAGAACTCCATCTCCAGTCAGCTCAAGCTTATATGTGAAGCCTTGGGAGAGGATTATCCGACAATGCCGCCGGCCCCGGCGAGTACTAGTAACCGATTCGAGTCGAACATGGCGAGGTTACAGAGGAACAAACCCGGTGGTGGTGGGGGTAATATGGACTTTGAACCTCAACAACATGTTTGGAGGCCGCAGCGCGGCTTACCGGAGCGCGCCGTGGCCATCCTTAAAGCATGGTTGTTTGAGCATTTTCTTCATCCGTACCCCACGGACACAGATAAACATATGCTAGCTACTCAAACTGGTCTATCAAGAAATCAGGTATCAAATTGGTTCATAAATGCTAGAGTCCGGGTATGGAAGCCAATGGTTGAGGAAATTCACATGCTCGAAACAAAAGGCGCCAATCAGATTTCTAGTAATAGAATAATGGGGGAGGGAACTTCAGCCTCCGATGAAAGTAGCAACCATGCCAAAGTATTAGTTGACCAACCTCTTCGGTGTTTGGAAATGGGATCATCATCATCATCCTTGGCCAATGCCACGGAGGAAAATGATGACATACATCATCATGAAGAGGTGCAATGGAGTCAAGAGAAGAGGTCTAAATTGGAATGCATGGATGGGACATTCATGGGTTTGATGCCGTTCCGCAGCGCCGGCGTCGGCGCCGAGGTTGGGGGACTTGGACCTGTGTCATTAACTTTGGAATTAAGGCATGGAGTTGAAGGATCACAACAACAACAACAAGAGATTCAACATCATGAGGAGCAGCTTAGACACCACTTTGGAGGGCACATGATTCATGATTTCGTAGGGTAA 1953 0.426 MSSLRPELHVAQQIRRDKLRFQNLQQDFPTNLEEQISLHQQDSRIYNMLDDVEQPPPQQQSLYSSHYYASSSPQQCMINNNCYYYSGNFATLSPSVANNHNHIVTVAHYSSSQNSSSSNNNAALQDILNLKPASNNSEMASSLMHHPYVIDNYTPTAAAGGGWNNHNNNHNQGLSLSLSSSSPLSHHHSQNVHVKSSTTTTNPMMMKPSSYYYRNSVGPLGPFTGYATILKSSRFLKPCQKLLDEYCRRHSAPSTSEWPSTTTCADDDDDDRSDHGLLVSEKGGRSSNNNNNNNVAAAGSSSSSSMFHAPSSSPSRPECQKNKAKLLFMQEEVTRRYKQYHQQMQMVVSSFETVAGLNSATPYVSLALKLVSKNFKSLKNSISSQLKLICEALGEDYPTMPPAPASTSNRFESNMARLQRNKPGGGGGNMDFEPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGANQISSNRIMGEGTSASDESSNHAKVLVDQPLRCLEMGSSSSSLANATEENDDIHHHEEVQWSQEKRSKLECMDGTFMGLMPFRSAGVGAEVGGLGPVSLTLELRHGVEGSQQQQQEIQHHEEQLRHHFGGHMIHDFVG* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0312 650 ProSiteProfiles 'Homeobox' domain profile. 436 499 IPR001356 GO:0003677
Ahy13g0312 650 Gene3D - 442 504 - -
Ahy13g0312 650 SMART prehox3 224 384 IPR006563 -
Ahy13g0312 650 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 24 619 - -
Ahy13g0312 650 SUPERFAMILY Homeodomain-like 441 505 IPR009057 -
Ahy13g0312 650 Pfam Associated with HOX 229 383 IPR006563 -
Ahy13g0312 650 MobiDBLite consensus disorder prediction 250 320 - -
Ahy13g0312 650 MobiDBLite consensus disorder prediction 161 206 - -
Ahy13g0312 650 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 24 619 - -
Ahy13g0312 650 CDD homeodomain 439 500 IPR001356 GO:0003677
Ahy13g0312 650 MobiDBLite consensus disorder prediction 265 279 - -
Ahy13g0312 650 MobiDBLite consensus disorder prediction 282 319 - -
Ahy13g0312 650 SMART HOX_1 439 503 IPR001356 GO:0003677
Ahy13g0312 650 Pfam Homeobox KN domain 456 495 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0312 Ahy-Chr13 3137715 3145221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0312 230 508 Homeobox Transcription Factor Family AT4G34610 43.416 3.51e-63 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ahy13g0312 POX 2.10E-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0312 13 3137715 3145221 Ahy13g0312 13 3137715 3145221 ECH
Ahy18g0507 18 4751255 4757603 Ahy13g0312 13 3137715 3145221 PCT
Ahy8g1313 8 29072648 29079123 Ahy13g0312 13 3137715 3145221 PCT
Ahy13g0312 13 3137715 3145221 Ahy18g0507 18 4751255 4757603 PCT
Ahy13g0312 13 3137715 3145221 Ahy8g1313 8 29072648 29079123 PCT