Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0307 ATGAAGTTTTCTTCTAATAATACCCCACCCCCTCGTAAGGTTAGCATCAATAATAATAATAACAATAAAGATCGTCACAAAAAGGTTAATGGAAGAGAAAGTCGCATTCTGTTGCCACCGTTATGTGCTGCGCGCGTGTTCCAGCTCACGCGCGAGCTAGGGCACAAGACTCATGGTGACACAATTGAGTGGCTCTTGCGCCACGCCGAACCTTCCATAGCCGCTGCAACTAGCGGCAAAAGTATAGTGCCACCACCATCATCATCATCGAACACCAATGATAATAATGGTAATCAAGGTATGAAAAATGGTGGTGGTGACACTGGGTGGTTGGAGTATGATGTTCTTGCAAACCTTGGTGTAGGGTTTTCTGCCAATGAAATTGCAGTGATCCAAGCAATGATCAAGAGCTTCAGCTGA 420 0.4524 MKFSSNNTPPPRKVSINNNNNNKDRHKKVNGRESRILLPPLCAARVFQLTRELGHKTHGDTIEWLLRHAEPSIAAATSGKSIVPPPSSSSNTNDNNGNQGMKNGGGDTGWLEYDVLANLGVGFSANEIAVIQAMIKSFS* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0307 139 ProSiteProfiles TCP domain profile. 22 76 IPR017887 -
Ahy13g0307 139 MobiDBLite consensus disorder prediction 19 33 - -
Ahy13g0307 139 MobiDBLite consensus disorder prediction 76 105 - -
Ahy13g0307 139 MobiDBLite consensus disorder prediction 1 33 - -
Ahy13g0307 139 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 99 IPR005333 GO:0003700
Ahy13g0307 139 Pfam TCP family transcription factor 21 97 IPR017887 -
Ahy13g0307 139 MobiDBLite consensus disorder prediction 1 18 - -
Ahy13g0307 139 MobiDBLite consensus disorder prediction 81 103 - -
Ahy13g0307 139 PANTHER TRANSCRIPTION FACTOR PCF1-LIKE 12 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0307 Ahy-Chr13 3108557 3108976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0307 11 100 TCP Transcription Factor Family AT3G27010 54.167 2.15e-25 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ahy13g0307 TCP 2.70E-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0307 - - ahf:112736155 235.728