Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0293 ATGCAGCGATCCGGTTACGGCGCCGACGGAATATATAGGTCCTTGAGACCTTCCTTTTCCCTTCCCAAAACCACCACCTCCCTCACCTCCTTCCTCTTCCAAAACACCACCGCCACCTCCTCCTCCGCTTCCAAAACCGCCCTCATCGACGCCGATACCTCCGAAACACTCACCTTCCGCCAACTCAAAACCACCGTCGCCAAGCTCTCTCACGCCCTCCTCCGCCTCGGCCTCAAAAAACACGACGTTCTCCTCATCCTCGCCCCAAACTCCATCCACTTCCCTATCTTGTTCCTCGCCGCCACCGCCATCGGCGCCGTCGTGACCACCGCGAACCCTCTTTACACCGTGACGGAGCTCTCCAAACAAATAAACAACTCCAACCCGAAGCTCGTGGTCACAGTTGCAGAATTATACGAGAAAGTCAGATCCTTCAAGTTCGAATTGCCCGCAGTGTTAATCGGTTCCGAAACGACACCAGAAACAATCAATTATAGTCGTTTAATGGAAGAAGTGGCAGGCGAGAATGAGTTACCAGTAAACGACGTGAATGAAGACGATACGGCAGCGCTTTTGTATTCTTCGGGAACGACGGGAGTGAGCAAGGGCGTGATTCTGACGCACGGGAATTTCATAGCGGCTGCGTTGATGATTGGAATGGACGACGATTACGTGGACGAAATTGAGGGAGTAAACGACAGCGTGTACCTCTGCGTTTTACCGATGTTCCACGTATTCGGGTTGGCGGTTATCTTGTACGCGCAGCTTAGAAGAGGGAGCACGGTGGTGTCCATGAGGAGATTCGAGTTGGAGAAGTTTCTAGAAGGCATTGAGAAGCACAAGGTGACGAACCTTTGGGTTGTGCCTCCGATCCTGCTTGCGATGGCCAAGCACAGCGTTGTGGATAAGTATGACGTGTCATCGTTGAGAAGGATTGGTTCCGGTGCTGCTCCTCTTGGCAAGGACTTGATGCGAGATTGTGCCAACCGTTTTCCTCATGCTGCTCTCATTCAGGGGTATGGGATGACAGAAACTTGTGGCATTATTTCTGTGGAGAATCCAAGAGCAGGGGTTCGTCATAGTGGTTCAACTGGAATGCTAGTTTCTGGAGTGGAAGCTCAAATCATGAGTGTTGATACGAACAAGCCCCTTCCCCCTAAACAATTGGGTGAGATTTGGGTACGGGGTCCAAATATGATGAAAGGTTATTTTAAGAATCCAGAGGCTACAAGATCAACTATAGATAGCAAAGGGTGGGTACATACCGGAGATCTTGGATATTTTGATGAGGAGGGTCAACTTTATGTTGTTGACCGTCTTAAAGAACTCATCAAGTATAAAGGTCTTCAGGTTGCACCAGCAGAACTTGAAGGACTTCTCGTTTCTCACCCTCAAATATTAGATGCTGTTGTCATCCCATATCCGGATGATGAGGCTGGTGAGGTTCCAATTGCCTTTGTTGTTCGTTCACCCAACACTTCACTCACTGAACAAGATGTTCAGAAGTTTATTGCTAATCAGGTTGCACCATTCAAAAGATTGCGAAGGGTGACATTCATCAACAGTGTTCCTAAGACAGCTTCAGGAAAAATACTCAGAAGAGACCTCATAGCAAAAGTACGATCCAAAATATAG 1635 0.4875 MQRSGYGADGIYRSLRPSFSLPKTTTSLTSFLFQNTTATSSSASKTALIDADTSETLTFRQLKTTVAKLSHALLRLGLKKHDVLLILAPNSIHFPILFLAATAIGAVVTTANPLYTVTELSKQINNSNPKLVVTVAELYEKVRSFKFELPAVLIGSETTPETINYSRLMEEVAGENELPVNDVNEDDTAALLYSSGTTGVSKGVILTHGNFIAAALMIGMDDDYVDEIEGVNDSVYLCVLPMFHVFGLAVILYAQLRRGSTVVSMRRFELEKFLEGIEKHKVTNLWVVPPILLAMAKHSVVDKYDVSSLRRIGSGAAPLGKDLMRDCANRFPHAALIQGYGMTETCGIISVENPRAGVRHSGSTGMLVSGVEAQIMSVDTNKPLPPKQLGEIWVRGPNMMKGYFKNPEATRSTIDSKGWVHTGDLGYFDEEGQLYVVDRLKELIKYKGLQVAPAELEGLLVSHPQILDAVVIPYPDDEAGEVPIAFVVRSPNTSLTEQDVQKFIANQVAPFKRLRRVTFINSVPKTASGKILRRDLIAKVRSKI* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0293 544 Gene3D - 442 543 IPR045851 -
Ahy13g0293 544 ProSitePatterns Putative AMP-binding domain signature. 191 202 IPR020845 -
Ahy13g0293 544 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 543 - -
Ahy13g0293 544 Pfam AMP-binding enzyme 42 446 IPR000873 -
Ahy13g0293 544 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Ahy13g0293 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 543 - -
Ahy13g0293 544 CDD 4CL 25 536 - -
Ahy13g0293 544 Gene3D - 9 441 IPR042099 -
Ahy13g0293 544 SUPERFAMILY Acetyl-CoA synthetase-like 28 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0293 Ahy-Chr13 2943519 2946518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0293 1 544 Monolignol Biosynthesis Gene Families AT4G05160 65.099 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0293 K01904 - gmx:100808944 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0293 13 2943519 2946518 Ahy13g0293 13 2943519 2946518 ECH
Ahy18g0526 18 5092819 5096056 Ahy13g0293 13 2943519 2946518 PCT
Ahy8g1332 8 29365169 29368430 Ahy13g0293 13 2943519 2946518 PCT
Ahy13g0293 13 2943519 2946518 Ahy18g0526 18 5092819 5096056 PCT
Ahy13g0293 13 2943519 2946518 Ahy8g1332 8 29365169 29368430 PCT