Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0280 ATGCTCGCATTCCGGCCATGCTTCTTCAACCCACCACTCTGCCGCCCCATTTCCGTTAAAGTTCTCTCCTTTTTCGCATTTCCTTCTTCTCACATTCTCTCTCTCCCTTTCCCCCATCGCACAATGACCAAACCACCCTCCGCCTTCGACGCTCTCATGTCCGGTGCTCGCGCCGCCGCCGCCGCCGCTGCCAAGAAGAAGAAAGCCGAGCAGTCGCAGCAACCAACTGTTTCTTCTCCCAAGAAACGAAAACCTTCATCCTCCACTCTCCCCACTCCAACCTCCACGCTAAACCCTAACGACCCCAAACCCTCCGAAACCGTTCCTACGCCAACGAGTGACCCGCCCAAGCAAGAACCGGAGAAAGAAGGCCCTCCTCCGACCAAGACTCGCCACGTGTCTTCTTCATCTGCCTTGCAGGAGCTGAAGAAGCGCATTCCGCAGCTGAAGGCGAAGCCTTCGAAATTCGATCCTAGCTCAGTGGCTTGTTGGGAGAAGGGCACGCCTGTGCCGTTCTCGTTACTGGCGTTGGCGCTTGACATGATTTCTATGGAGCCTGGCAGAATCAAGATGACAGATATTGTGTGCAATTTGATGAAGACTGTGATATACTCTACCCCTGAGGATCTTGTGCCTCTGATTTATCTCTTCGCGAAGAGGGTTGCTCCGGCGCATGAAGGGCTGGAATTGGGAATTGGCGAGACTTCGATTATTAGGGCACTTGCTGAGGCAACTGGAAGTACTGAATCCAAAATCAAGACGCAGTATCAGAAAGTGGGTGATTTGGGAAAAGTTGCCAAGGAGTGCCGTTCATCTCAGTCCATGATGCGGAAACCTGAGGCTCTGACTATTAGGAAGGTTTTCAACACCTTCCGTCTTATTGCCAAGGAATCTGGAAGAGACAGTCAAAAGAAGAAAAAGAATCATATAAAGGCACTTCTTGTTGCTGCAACTGACTGCGAACCTCAATATCTTATCTGTTTTCTACAGGGAAAATTGCGGATTGGTGTGGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCAGCAGTACAGAGTGAAGAACATTCTAAACCACCTGCTGGCATTAAGTCTCCTTTGGAAGAGGCTGTAAAAATTGTTAAACAAGTCTACTCTGTTCTTCCTGTCTACGACGAAATAGTATCTGCACTTCTTACGCATGGTGTATGGAAACTTCCATCAATATGTAATTTTACTCCTGGTATTCCAGTTGGACCTATGCTGTCAAAACCAACGAAGGGTATCTCTGATATTCTAAATTCATTGCAAGATGTGGAGTTTACTTGTGAATACAAGTATGATGGAGAGCGTGCCCAGGTACATTACATGGAAAATGGTTCAGTTGAGATTTATAGTAGAAATGCTGAGCGGAATACTGGGAAGTTTCCTGATGTTGTTGCTGCAATTTCAAGGTTAAAGAAATCAACTGTATCATCATTTGTTCTTGATTGTGAAATTGTTGGATATGATCGTGAGAAACAGACCATCCGTTCTTTCCAGGATCTTGCTACTCGGCCTCGTAAAAATGTATCTGTGGATAATATAAAGGTTGACGTCTGCATATTTGCTTTTGATATACTGTATCTTAATGGCCGAGTACTTCTTCAGGATAACCTGAAAATCCGTAGAGAGCATCTTTATGCCTCTTTTGAAGAAGAAACTGGAGTTTTTCAGTATGCAACGGCAATAACATCAAATGACATTGAGGAAATTCAGAAATTTCTCGACAAAGCTGTTGGGTCAAGCTGTGAGGGATTAATCATTAAAACTTTAAATGATGATTCTACATATGAACCTTCCAATCGGTCACACAATTGGCTAAAACTGAAGAAAGATTATCTGGATAACATAGGGGACTCGCTAGATTTGGTACCTATAGCTGCATTCTATGGACGTGGGAAACGTACAGGAGTCTATGGTGCTTTTCTTCTTGCTTGCTATGACTACAATAACGAAGAATTTCAAAGTATTTGTAAGATTGGAACGGGATTTACTGAAGACGTGCTCGAACAGCGTTCTAAAAGTCTTGGTTCTGAAGTGATTCCTGGGCCAAAGCCATACTATCGATATGGAGATACAATGAAGATGCCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTGCAGATTTGACCATTAGCCCAGTTTACCGAGCTGCAGTGGGCATAGTAGATTCAGATAAGGGCATATCTCTTAGATTCCCACGGCTAGTTCGAGTTCGACCTGACAAAACACCCGAGCAGGCCTCATCATCTGAGCAGGTTGCTGAGATGTATAATGCTCAAAAAGCCACTCAAACTAAAGAAAAAGAAAAAAACAAAAACAAACAGGATGGTAGTGAGTCACCAAAAAGAGAGATTGGCAGTGAGTCACCAAAAAAACAGATTGGCAGTGAAGACAAAGACGAAGTCGCAGATGAAGATGAAGATGAAGATGAAGATGAAGATGTAGATGTAGATGTAGATGTAGATGTAGATGTAGATGTAGATGTAGATGTAGATGCAGATGAAGATGAAGATAAGTGA 2556 0.4433 MLAFRPCFFNPPLCRPISVKVLSFFAFPSSHILSLPFPHRTMTKPPSAFDALMSGARAAAAAAAKKKKAEQSQQPTVSSPKKRKPSSSTLPTPTSTLNPNDPKPSETVPTPTSDPPKQEPEKEGPPPTKTRHVSSSSALQELKKRIPQLKAKPSKFDPSSVACWEKGTPVPFSLLALALDMISMEPGRIKMTDIVCNLMKTVIYSTPEDLVPLIYLFAKRVAPAHEGLELGIGETSIIRALAEATGSTESKIKTQYQKVGDLGKVAKECRSSQSMMRKPEALTIRKVFNTFRLIAKESGRDSQKKKKNHIKALLVAATDCEPQYLICFLQGKLRIGVAEQTLLAALGQAAVQSEEHSKPPAGIKSPLEEAVKIVKQVYSVLPVYDEIVSALLTHGVWKLPSICNFTPGIPVGPMLSKPTKGISDILNSLQDVEFTCEYKYDGERAQVHYMENGSVEIYSRNAERNTGKFPDVVAAISRLKKSTVSSFVLDCEIVGYDREKQTIRSFQDLATRPRKNVSVDNIKVDVCIFAFDILYLNGRVLLQDNLKIRREHLYASFEEETGVFQYATAITSNDIEEIQKFLDKAVGSSCEGLIIKTLNDDSTYEPSNRSHNWLKLKKDYLDNIGDSLDLVPIAAFYGRGKRTGVYGAFLLACYDYNNEEFQSICKIGTGFTEDVLEQRSKSLGSEVIPGPKPYYRYGDTMKMPDVWFEASEVWEVKAADLTISPVYRAAVGIVDSDKGISLRFPRLVRVRPDKTPEQASSSEQVAEMYNAQKATQTKEKEKNKNKQDGSESPKREIGSESPKKQIGSEDKDEVADEDEDEDEDEDVDVDVDVDVDVDVDVDVDADEDEDK* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0280 851 Pfam ATP dependent DNA ligase C terminal region 642 754 IPR012309 GO:0003910|GO:0006281|GO:0006310
Ahy13g0280 851 Gene3D - 423 621 - -
Ahy13g0280 851 MobiDBLite consensus disorder prediction 60 140 - -
Ahy13g0280 851 MobiDBLite consensus disorder prediction 69 103 - -
Ahy13g0280 851 MobiDBLite consensus disorder prediction 774 811 - -
Ahy13g0280 851 MobiDBLite consensus disorder prediction 773 851 - -
Ahy13g0280 851 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 66 786 - -
Ahy13g0280 851 SUPERFAMILY Nucleic acid-binding proteins 625 772 IPR012340 -
Ahy13g0280 851 Pfam ATP dependent DNA ligase domain 413 617 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Ahy13g0280 851 Gene3D - 147 415 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ahy13g0280 851 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 229 769 IPR000977 GO:0003910|GO:0005524|GO:0071897
Ahy13g0280 851 CDD OBF_DNA_ligase_I 625 771 - -
Ahy13g0280 851 MobiDBLite consensus disorder prediction 812 851 - -
Ahy13g0280 851 ProSitePatterns ATP-dependent DNA ligase signature 2. 591 617 IPR016059 GO:0003909
Ahy13g0280 851 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 437 445 IPR016059 GO:0003909
Ahy13g0280 851 Gene3D DNA ligase/mRNA capping enzyme 442 567 - -
Ahy13g0280 851 ProSiteProfiles ATP-dependent DNA ligase family profile. 519 655 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Ahy13g0280 851 CDD Adenylation_DNA_ligase_I_Euk 402 620 - -
Ahy13g0280 851 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 153 403 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ahy13g0280 851 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 405 623 - -
Ahy13g0280 851 Pfam DNA ligase N terminus 171 346 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ahy13g0280 851 Gene3D - 622 786 IPR012340 -
Ahy13g0280 851 PANTHER DNA LIGASE 1 66 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0280 Ahy-Chr13 2842519 2849335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0280 1 773 Core DNA Replication Machinery Family AT1G08130 62.166 0.0 969
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0280 K10747 - aip:107642653 1286.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0280 13 2842519 2849335 Ahy13g0280 13 2842519 2849335 ECH