Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0276 ATGGATTACAAGGAAGACTATTATTTGTCCAACACTAGCAATGATAATTGTAATGTTGTTCATCATGATGCTACCCATCATATAGCCAAGGGAAAACGGACCAAAAGGTTGAGGCTTTTGTGTGGCGGCGCAACCGTCATCATGCCGGCCTCTAGCTGTTCTAGCGCTTCCGGCGATGATCACGGCTCGTTTTCGATTTCTTCCACAACCAATCAAGAGGAAGAAGACATGGCTAATTGCTTGATTCTTCTTGCTCAAGGAGGAGGAGATTCTCATCAAAAACCGCCACAAGTTGATGATCAAGATGAAGATGATGATGGTTGTGGTAACAACAAGAAGAAATTCTCGGAGATTGAAACCGCCACCATAAACAACAACAAGGTTGGTTTCTATATTTATGAGTGCAAGACTTGTAACCGAACCTTCCCTTCCTTTCAAGCCTTGGGTGGTCATAGAGCCAGTCACAAGAAGCCTAAGCTCACAACAATCCCTGCCGCCGAGGACAAGAAACCACCACCACCGTCTCCGCCACCTCCACTGCCTCCCCCACCACCGCAGCAACTTATGATGAAGACCAATTATGACCATCATCTTCATCATAGCCAGCAGATTGAAACTGTCCCTCCAAATAATAATAATCCAATAATTTCTCTACAATTTGGGAGTGGGCAAAAAGGTAATTTCCACGGGAACAACAACAACAAGCCCAACAAGATTCACGAGTGCTCCATATGTGGCTCCGAATTCACATCCGGCCAAGCACTGGGTGGACACATGAGAAGGCATAGGGCTACAGCGGCCGCAGCCGCCAATAGTACTGCTCAGGCCAATGTTGGCCTAAGCAGAATTGAGGCAACTTCTACTGTTATAACTACAACAGTAGAAGTTCAGCCTCGAAATATTCTAGAATTGGATCTCAACCTTCCGGCTCCGGAGGAAGACCTCCGGGAGCCAAAGTTTCAGTTTGCTACCGCAGCAACTAAGAAATCTATGGTGCTCTCAGCTGCTCCGGCTTTGGTGGACTGCCATTATTAG 1035 0.4667 MDYKEDYYLSNTSNDNCNVVHHDATHHIAKGKRTKRLRLLCGGATVIMPASSCSSASGDDHGSFSISSTTNQEEEDMANCLILLAQGGGDSHQKPPQVDDQDEDDDGCGNNKKKFSEIETATINNNKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLTTIPAAEDKKPPPPSPPPPLPPPPPQQLMMKTNYDHHLHHSQQIETVPPNNNNPIISLQFGSGQKGNFHGNNNNKPNKIHECSICGSEFTSGQALGGHMRRHRATAAAAANSTAQANVGLSRIEATSTVITTTVEVQPRNILELDLNLPAPEEDLREPKFQFATAATKKSMVLSAAPALVDCHY* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0276 344 MobiDBLite consensus disorder prediction 149 190 - -
Ahy13g0276 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 267 IPR013087 -
Ahy13g0276 344 SMART c2h2final6 133 155 IPR013087 -
Ahy13g0276 344 SMART c2h2final6 240 262 IPR013087 -
Ahy13g0276 344 Pfam C2H2-type zinc finger 133 158 - -
Ahy13g0276 344 Pfam C2H2-type zinc finger 240 264 - -
Ahy13g0276 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Ahy13g0276 344 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Ahy13g0276 344 MobiDBLite consensus disorder prediction 167 188 - -
Ahy13g0276 344 SUPERFAMILY beta-beta-alpha zinc fingers 132 262 IPR036236 -
Ahy13g0276 344 Gene3D Classic Zinc Finger 223 295 - -
Ahy13g0276 344 PANTHER ZINC FINGER PROTEIN ZAT5 21 344 - -
Ahy13g0276 344 MobiDBLite consensus disorder prediction 86 112 - -
Ahy13g0276 344 ProSitePatterns Zinc finger C2H2 type domain signature. 242 262 IPR013087 -
Ahy13g0276 344 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 21 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0276 Ahy-Chr13 2797332 2798735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0276 27 344 C2H2 Transcription Factor Family AT2G28200 39.577 2.13e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy13g0276 zf-C2H2_6 2.80E-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0276 13 2797332 2798735 Ahy13g0276 13 2797332 2798735 ECH
Ahy13g0276 13 2797332 2798735 Ahy19g2334 19 137443075 137444714 ECH
Ahy18g0541 18 5266612 5268280 Ahy13g0276 13 2797332 2798735 ECH
Ahy16g1696 16 59206202 59207612 Ahy13g0276 13 2797332 2798735 ECH
Ahy12g3028 12 119827169 119828313 Ahy13g0276 13 2797332 2798735 ECH
Ahy18g0541 18 5266612 5268280 Ahy13g0276 13 2797332 2798735 PCT
Ahy8g1347 8 29563132 29564352 Ahy13g0276 13 2797332 2798735 PCT
Ahy13g0276 13 2797332 2798735 Ahy18g0541 18 5266612 5268280 PCT
Ahy13g0276 13 2797332 2798735 Ahy8g1347 8 29563132 29564352 PCT