Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0274 ATGGCGGCTGCATCATCTGATGAAGGTGGTGGTGGTGGTGGATTCCCACCTATGACGCAATACTCATCATCATCATCATCCACCATGTACCATTATCTCTCAGTTCTCAATGATAAAATCAACGAGTTGCAGTCCCTTGTGGGGGTTGTAGCCTCCCCCAATCGGCACCACTCATCAATTCCTTGTTCTTCCTATTCCATGGCGATATCCACCATGACCTCCACCATCCAAGATATCATACTTGCTTCCTCTTCATTCAGACTCACCTTCCAACAACACATCAATAGTTATAACAATCCATCATCAGGTAACATTATTGCTACTTCTACTTGCAATAATCAACAATTAGAATTGCACCCTCATCACCACCAATCTTATGATTATAATAATAGTAATATCATTACTAGTAGTGTTGCTAATGATGAACCTGCACAAGAACAAGACGAAGAAGAAGAAGAAGAAACACTCCATTGGTTTTCTGAACCCTACAACAATAACAATAGTACTGTTATTTATTGTGATGATAACAATAATACTAAGGATGATGATGGAGAAGAAGAAACAGATATAATTGAGTTGGATGCTGCTGATTTGTTAGCAAGCTACACACATTTCTGCCAAGTATGTGGGAAAGGATTTAAGCGCGAAGCGAATCTGAGGATGCATATGAGGGCTCATGGAGATGAATTCAAAACCAGTGAAGCCTTGAAGAACAATAACAATAACAAGAAGATGATGATGAAGAAGAAGAAGAAGTATTCGTGCCCTGAAGATGGGTGCAGGTGGAACAAGAATCATGCCAAGTTTCAGGCACTGAAATCAATGGTGTGTGTGAAGAATCACTACAAGAGAAGCCATTGCCCAAAGATGTATGTTTGCAAGAGGTGCAACAACAAGAACTTCTCTCTGCTCTCTGATTTGAGGACCCATGAGAAGCACTGTGGTGATCCCAATAAATGGTTGTGTTCTTGTGGAACCACTTTCTCAAGAAAAGACAAGCTCTTCGGACATCTTGCTTTGTTCCTTGGCCACTCCCCAGTTCATGCTGCTACTCAAGGATCATAA 1065 0.4103 MAAASSDEGGGGGGFPPMTQYSSSSSSTMYHYLSVLNDKINELQSLVGVVASPNRHHSSIPCSSYSMAISTMTSTIQDIILASSSFRLTFQQHINSYNNPSSGNIIATSTCNNQQLELHPHHHQSYDYNNSNIITSSVANDEPAQEQDEEEEEETLHWFSEPYNNNNSTVIYCDDNNNTKDDDGEEETDIIELDAADLLASYTHFCQVCGKGFKREANLRMHMRAHGDEFKTSEALKNNNNNKKMMMKKKKKYSCPEDGCRWNKNHAKFQALKSMVCVKNHYKRSHCPKMYVCKRCNNKNFSLLSDLRTHEKHCGDPNKWLCSCGTTFSRKDKLFGHLALFLGHSPVHAATQGS* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0274 354 ProSitePatterns Zinc finger C2H2 type domain signature. 206 226 IPR013087 -
Ahy13g0274 354 MobiDBLite consensus disorder prediction 1 20 - -
Ahy13g0274 354 Gene3D Classic Zinc Finger 200 261 - -
Ahy13g0274 354 PANTHER OS08G0562300 PROTEIN 22 350 - -
Ahy13g0274 354 MobiDBLite consensus disorder prediction 139 163 - -
Ahy13g0274 354 SUPERFAMILY beta-beta-alpha zinc fingers 203 228 IPR036236 -
Ahy13g0274 354 Pfam C2H2-type zinc finger 204 226 - -
Ahy13g0274 354 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 22 350 IPR044300 GO:0010044|GO:0010447
Ahy13g0274 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 231 IPR013087 -
Ahy13g0274 354 SMART c2h2final6 291 313 IPR013087 -
Ahy13g0274 354 SMART c2h2final6 204 226 IPR013087 -
Ahy13g0274 354 SMART c2h2final6 253 286 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0274 Ahy-Chr13 2784535 2785803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0274 26 352 C2H2 Transcription Factor Family AT5G22890 47.590 3.03e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy13g0274 zf-C2H2_6 3.10E-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0274 - - gmx:100802399 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0274 13 2784535 2785803 Ahy13g0274 13 2784535 2785803 ECH
Ahy18g0542 18 5284701 5287416 Ahy13g0274 13 2784535 2785803 PCT
Ahy8g1348 8 29613769 29616240 Ahy13g0274 13 2784535 2785803 PCT
Ahy13g0274 13 2784535 2785803 Ahy18g0542 18 5284701 5287416 PCT
Ahy13g0274 13 2784535 2785803 Ahy8g1348 8 29613769 29616240 PCT