Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0268 ATGGCTATTGCTGGTCTGCACAATGTATCTGTACTCGAGTCTTCTTTCCTGAGGGATTCCCATTCCCAGTCATCCAGCAGGCGGGGAGATGGAAGGAGGGGAGGAACTCGGTCATCCGCACTCTTGCAAATGTGGCAAGAGCTTGAAGATGAACATGCAGTGAATCAGGTTCAAGGAAGGCCTGGTGAAGTACTACTTGAACAAAGGAGTGATGGGTTGATTTCTGACCTCTCACAGGCAGATTCTCCAGGTAGCCATGAGAGAGGACAGGATCGAATGCTAGACGACGCAGTTTTGGGCGACACTGAATCTGAAACATGGTCACAGTCACAAAGTCAGAATGAATCCCATTACGATCATGAGGATTTAAACAACTCCAGCTGTGAAAACTCCTCTGATTTGGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTTAGGGAATGGATGAGCAGTGGTGCTGGGGATCATGGATCAAACATTTCCCGGAGAAATAACAGTTCAAGGGGAGAATGGCTTGGTGAAACTGAGCAGGAAAGGGTGAGAATAATAAGGGAGTGGGTACAAATGAGTAGCCAGCACAGAGGTGTTTCTTCTGGGGAAACCAGGGAAGAGCAATCTGCTGAAATTGGTACACAAATTGAACGTGTTCGTGACGGCTTTGTTGTTAACCAGGGTGAGGGCCAGACTGAACATTTTCGTAGGGGCATCCGTAAATTATGCGGACGACAGGTTATGCTTGATATGCTGAAGAAGGCTGAGATGCAAAGGCAAAGAGAAATTCAAGAGTTGTTGAACCATCGGGCAGTATCTCATTTCCCTCATCGTAATCGCATTCAGGCATTGCTTAGAGGCTGGTTCTTGAGAAATGATAGATCTGTTGATAATAACAGGTCCACTTCTGTTGCTGAAAGTGAACTAGGTTTATTGAGGCAAAGACAAACTGTATCAGAACTAAGGGAAGGATTCTTCTCCAGAAAGGATAAAACTGGTTGCAGTCAAGCAACTGGCAACGTATCTGATATGTCACCTAACAGTGATATTGAATTTAATACGATTGAACAAATCGGTGCTAGCAATTCACATGTGGTCCCCACTCTGAATTCTGAACGGTCTGAATCTAATACCAGAAGAAATGATGGACTTGAGATGTTGGGGGGCCAGAATTGTTTGCAGGAAACAATGTCTGACAATCCAGATCAACAAGATACTACTGGTCATGTAGAAGGAGCTCAGTTACAGAATTTGCAATTTGAACCAGTAAATCAGCTATCATCCAGTGTGGCCGTTGAAAGAAGAGATAGCACTGGGCAAAATGTTGATGTGAACCATGTGATGCCAGTTGAGGATACTGCTAGTGATCATGTGCAGCAAAGTTTGCAAACTGAAAATCCATTTCAGAGTGCTATGCAGGAATTCACTGAGGCATACAATGATCAACTTCGATCGGGTGATATAAGTAATGGTGTAAATGACTCATCAAACCCCAACCACCCCATGGAGGAAAATATTGTTGATATGAATCGGAATGAACCCGCTGCTCTGGTAGGAGAACAGCTGGAAGAAGATATTGAAAATGAAGGAAGTGTCTGGAATCAGAGTAACCGTGAATGGAGAAATAGCACGGAGGAAGGTGTAGATGATAATCAAGTGAGCAGTACATCAATGCAGTGGCCTGAAAATGAATTTGGAGATGAGGATGGAGAAAACTCTCGGCTGCAAGAAGGTCCTGAAGTCTGGCAAGAGGATGGTGGCTTCCAAGAGGCTGTAGAAAATTGGTTGGGGGCTCCTTCTGATCTTGAAAGTGCTCCAGTCGGTAGGATTCATGGATTTTACTTTCCAGACGACGACAATGTATATAGTGTTGAACTCAGGGAACTGCTTAATAGGAGAAGTGTCTCCAACCTCCTCCGTAGCAGTTTCCGCGATAGTCTTGACCAGTTGATACAATCATATGTTGCAAGGCAAGGCCATAATCAGATGGAGTGGGAGCTACAAGAAACAACCCCGTCTTCTGCCTCTGTGGAACAGGACCTTGAACAGCAGAGTAGGGATCAGATTGTTGGTCAGGAGGGTACTGTTAATAGTCCACATGACCTACCTTCTTTACCTATTCCTCCTCCTTTGCCTCTTTGGGACCGGCACCCTCGCCGTGACAGCTGGTCACAGTCGCAGAGTGACATGAATAATCAGCATCTAGGAGGAATTGATTGGGAGGTTGTCAATGACTTGAGAATTGACATGTCTAGACTGCAGCAAAGGATGAACAATATGCAAAGAATGCTGGAGGCTTGTATGGATATGCAGCTGGAGTTGCAGCGTTCAATAAGGCAAGAAGTTTCTGCTGCCCTAAATCGTTCGACTGGTTCATCAGGAACAAATGAGTTCGAGTCATCAGATGAATCCAAATGGGAATGTGTGAGGAAAGGGCTTTGCTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGTACATGTTCTAAATGTGCCAATGAGTTGCTTCAAAGTAAAAGGAAGTGCCCGATGTGTCAAGCCCCCGTGGTGGAGGTTATACGTGCTTATTCTATACTATAG 2595 0.4478 MAIAGLHNVSVLESSFLRDSHSQSSSRRGDGRRGGTRSSALLQMWQELEDEHAVNQVQGRPGEVLLEQRSDGLISDLSQADSPGSHERGQDRMLDDAVLGDTESETWSQSQSQNESHYDHEDLNNSSCENSSDLGEVERERVRQIFREWMSSGAGDHGSNISRRNNSSRGEWLGETEQERVRIIREWVQMSSQHRGVSSGETREEQSAEIGTQIERVRDGFVVNQGEGQTEHFRRGIRKLCGRQVMLDMLKKAEMQRQREIQELLNHRAVSHFPHRNRIQALLRGWFLRNDRSVDNNRSTSVAESELGLLRQRQTVSELREGFFSRKDKTGCSQATGNVSDMSPNSDIEFNTIEQIGASNSHVVPTLNSERSESNTRRNDGLEMLGGQNCLQETMSDNPDQQDTTGHVEGAQLQNLQFEPVNQLSSSVAVERRDSTGQNVDVNHVMPVEDTASDHVQQSLQTENPFQSAMQEFTEAYNDQLRSGDISNGVNDSSNPNHPMEENIVDMNRNEPAALVGEQLEEDIENEGSVWNQSNREWRNSTEEGVDDNQVSSTSMQWPENEFGDEDGENSRLQEGPEVWQEDGGFQEAVENWLGAPSDLESAPVGRIHGFYFPDDDNVYSVELRELLNRRSVSNLLRSSFRDSLDQLIQSYVARQGHNQMEWELQETTPSSASVEQDLEQQSRDQIVGQEGTVNSPHDLPSLPIPPPLPLWDRHPRRDSWSQSQSDMNNQHLGGIDWEVVNDLRIDMSRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGTNEFESSDESKWECVRKGLCCICCESNIDSLLYRCGHLCTCSKCANELLQSKRKCPMCQAPVVEVIRAYSIL* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0268 864 ProSiteProfiles Zinc finger RING-type profile. 812 851 IPR001841 -
Ahy13g0268 864 MobiDBLite consensus disorder prediction 16 37 - -
Ahy13g0268 864 MobiDBLite consensus disorder prediction 101 137 - -
Ahy13g0268 864 CDD mRING-HC-C3HC5_NEU1 812 850 - -
Ahy13g0268 864 MobiDBLite consensus disorder prediction 526 572 - -
Ahy13g0268 864 MobiDBLite consensus disorder prediction 526 560 - -
Ahy13g0268 864 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 863 - -
Ahy13g0268 864 Pfam Zinc finger, C3HC4 type (RING finger) 809 856 - -
Ahy13g0268 864 SUPERFAMILY RING/U-box 811 857 - -
Ahy13g0268 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 788 862 IPR013083 -
Ahy13g0268 864 MobiDBLite consensus disorder prediction 155 172 - -
Ahy13g0268 864 PANTHER PROTEIN, PUTATIVE-RELATED 1 863 - -
Ahy13g0268 864 Coils Coil 741 768 - -
Ahy13g0268 864 MobiDBLite consensus disorder prediction 149 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0268 Ahy-Chr13 2743891 2748900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0268 812 858 C3H Transcription Factor Family AT3G06140 42.553 1.31e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0268 - - gmx:100801329 1153.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0268 13 2743891 2748900 Ahy13g0268 13 2743891 2748900 ECH
Ahy18g0546 18 5331313 5336672 Ahy13g0268 13 2743891 2748900 ECH
Ahy18g0546 18 5331313 5336672 Ahy13g0268 13 2743891 2748900 PCT
Ahy8g1351 8 29653668 29659001 Ahy13g0268 13 2743891 2748900 PCT
Ahy13g0268 13 2743891 2748900 Ahy18g0546 18 5331313 5336672 PCT
Ahy13g0268 13 2743891 2748900 Ahy8g1351 8 29653668 29659001 PCT