Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0251 ATGGAGCAACACAACCCTCAACAACCCTCTAACCCCATTTTGGACCACACTAGCTCTTTCAACAACAACACTATCGTGCCGAACGAAGCAAAGGTGGCGGCGGTGCCTGATTCTGGAGGTTCGGACTCGGTGTCAAGACCCGAAGCTGGAGGTTGGGAGCAGCATCATCATGGAGTGGTGGTTGTGAAGAGGGGGAGAGGGAGACCTCGAAAGTACGTCGACACAGACGGCAGCGGGGGAGGGATGATGACGTCTCCGACGTCAGAGCCGCCGCCTTCGGGGTTTGCGGAAGCGGTAGCCTCCCAACTTGAGAGCCCTGCGGTGAAGAGGGGAAGAGGAAGGCCACGTGGTTCTGGAAAACTGCAGATTCTGGCCTCCATTGGTGGGTTTGTTGCAGAAACAGCTGGTGGAAGCTTCACACCTCATGTGATGATTGTTGGTACTGGAGAGGATGTGGTAAGTAGGATATTGTCATTTTTCCAAAAAGGCCCTCGTGCTATGTTTGCATACTTTCAGCTACTGGTTCTGTGTCTAGTGTTGTAA 543 0.5341 MEQHNPQQPSNPILDHTSSFNNNTIVPNEAKVAAVPDSGGSDSVSRPEAGGWEQHHHGVVVVKRGRGRPRKYVDTDGSGGGMMTSPTSEPPPSGFAEAVASQLESPAVKRGRGRPRGSGKLQILASIGGFVAETAGGSFTPHVMIVGTGEDVVSRILSFFQKGPRAMFAYFQLLVLCLVL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0251 180 PANTHER DUF296 DOMAIN PROTEIN 23 167 - -
Ahy13g0251 180 Pfam AT hook motif 109 119 IPR017956 GO:0003677
Ahy13g0251 180 Pfam AT hook motif 63 74 IPR017956 GO:0003677
Ahy13g0251 180 MobiDBLite consensus disorder prediction 1 94 - -
Ahy13g0251 180 PRINTS AT-hook-like domain signature 63 73 IPR017956 GO:0003677
Ahy13g0251 180 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Ahy13g0251 180 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Ahy13g0251 180 SMART AT_hook_2 63 75 IPR017956 GO:0003677
Ahy13g0251 180 MobiDBLite consensus disorder prediction 1 28 - -
Ahy13g0251 180 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 23 167 IPR039605 GO:0003680
Ahy13g0251 180 PRINTS High mobility group protein (HMGY) signature 98 117 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Ahy13g0251 180 PRINTS High mobility group protein (HMGY) signature 61 73 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0251 Ahy-Chr13 2554558 2561520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0251 58 167 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 45.455 6.62e-21 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0251 - - ahf:112736409 323.168