Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0207 ATGCCACGGGGAAAGGCAAATTCTTCATCAGTTGCTAAGCCATCCGAGCCTGAAAATCCAGCTGAATCTGATGAAAAGATCGATTTTGATGACGCAAATGATGCTGAGGAAACAATGGAAGAAGAAATTGAATATGAAGAAGTAGAAGAAGAAGAGGAAGTGGAAGAAATAGAAGAGGTGGAAGAAGAGGAAGAGGATCCGGAGGAGGTTGAGGTGGTGGAGGAGGAAGAGGAGGAAGAGGATCCGGAGGAGGTGGAAGAGGTTGAAGAAATGGAAGAAGATAATATCATGCAAAACAGTAGCAAGGCAGAAGATAAGGATGAGAAGAAAAAGCATGCTGATCTTCTATCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGTATTCCACTTGATGCCTCAACTGAGGATTTGAAAGCATTTTGTGAGTCTATTGGGGAAGTTGCAGAGGTTCGTGTAATGACAGGAAAAGATTCTTCTGAGAATAAGGGATTTGGTTTTGTGACATTTAAAAGTGTGGAATTGGCTTCTAAAGCCATCAAGGAGCTGAACAATAAAGCATTTAAGGGTAGAAAAATAAAATGTTCAACAGCTCAAGCAAAACACCGTCTTTTTATTGGCAATGTTCCCAGAAACTGGGGTGATGAAGATCTCAGGAAGGTTGTATCTGATGTTGCACCTGGAGTTACTGGTTTAGAACTAGTCAAGGATATGAAGAACACTAAAAATAACCGTGGATTTGCTTTTATTGACTATTATAATCATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAGCTCAACATTTAAGCTAGGTGACAATGCTCCAACGGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTTCATCTCAGGTGAAGGCAGTATATGTGAAGAACTTGCCTAGGAATGTAACTCAGGAGCAGATGAAGAAGCTTTTTGAACATCATGGGAAGATCACAAAGGTGGTTCTTCCACCACCAAAGTCTGGGCAGGAAAAGAATAGAATAGGTTTTGTACATTTTGCAGAGAGGTCAAGTGCTATGAAAGCACTAAAAAACACTGAAAGATATGAATTAGAAGGTCAAATTTTGGACTGCTCTCTAGCTAAGCCACAGGCTGATCAAAAGTCTGGAGGATCAAACTTGCAGAAGCCAGGATTGCTTCCAAGCTATCCCCCACATGTTGGTTACGGTTTGGTTGGTGCCCTTGGCACGGGACATGGTTCCCCAGGTTTTGCACAGATGCCCTCGATGTATGGAGGGGGTGCTCCTGCTGAAATTTCCATGATGCCTATGCTTCTGGCCGACGGTCGGATTGGATATGTCTTGCAACAACCAGGTCAGGGAGTGCACTCACGAACACCACCCTTCTTTCAGAGAGGTGGCTGGGGTGGTGGTGGTGGGAGTAGCAGCAGGAATGCTAGCAGTTCAAGTAAAGGAAGGCACAATAATAATAGTAGCCAGGGGCATAGATACCGCCCATATTAG 1500 0.4373 MPRGKANSSSVAKPSEPENPAESDEKIDFDDANDAEETMEEEIEYEEVEEEEEVEEIEEVEEEEEDPEEVEVVEEEEEEEDPEEVEEVEEMEEDNIMQNSSKAEDKDEKKKHADLLSLPPHGSEVYIGGIPLDASTEDLKAFCESIGEVAEVRVMTGKDSSENKGFGFVTFKSVELASKAIKELNNKAFKGRKIKCSTAQAKHRLFIGNVPRNWGDEDLRKVVSDVAPGVTGLELVKDMKNTKNNRGFAFIDYYNHACAEYSRQKMMSSTFKLGDNAPTVSWADPKNADSSASSQVKAVYVKNLPRNVTQEQMKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSSAMKALKNTERYELEGQILDCSLAKPQADQKSGGSNLQKPGLLPSYPPHVGYGLVGALGTGHGSPGFAQMPSMYGGGAPAEISMMPMLLADGRIGYVLQQPGQGVHSRTPPFFQRGGWGGGGGSSSRNASSSSKGRHNNNSSQGHRYRPY* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0207 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Ahy13g0207 499 Coils Coil 38 66 - -
Ahy13g0207 499 Gene3D - 204 284 IPR012677 -
Ahy13g0207 499 SUPERFAMILY RNA-binding domain, RBD 120 289 IPR035979 GO:0003676
Ahy13g0207 499 PANTHER RNA RECOGNITION MOTIF 1 466 - -
Ahy13g0207 499 SMART rrm1_1 298 371 IPR000504 GO:0003723
Ahy13g0207 499 SMART rrm1_1 204 281 IPR000504 GO:0003723
Ahy13g0207 499 SMART rrm1_1 124 197 IPR000504 GO:0003723
Ahy13g0207 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 195 IPR000504 GO:0003723
Ahy13g0207 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 366 IPR000504 GO:0003723
Ahy13g0207 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 271 IPR000504 GO:0003723
Ahy13g0207 499 Gene3D - 9 203 IPR012677 -
Ahy13g0207 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 285 IPR000504 GO:0003723
Ahy13g0207 499 CDD RRM_SF 125 197 - -
Ahy13g0207 499 MobiDBLite consensus disorder prediction 470 499 - -
Ahy13g0207 499 MobiDBLite consensus disorder prediction 23 94 - -
Ahy13g0207 499 SMART rrm2_1 124 197 IPR003954 GO:0003676
Ahy13g0207 499 SMART rrm2_1 298 371 IPR003954 GO:0003676
Ahy13g0207 499 Gene3D - 286 391 IPR012677 -
Ahy13g0207 499 MobiDBLite consensus disorder prediction 450 499 - -
Ahy13g0207 499 MobiDBLite consensus disorder prediction 1 123 - -
Ahy13g0207 499 MobiDBLite consensus disorder prediction 95 117 - -
Ahy13g0207 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 375 IPR000504 GO:0003723
Ahy13g0207 499 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 466 - -
Ahy13g0207 499 SUPERFAMILY RNA-binding domain, RBD 292 394 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0207 Ahy-Chr13 2196534 2201310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0207 145 437 Eukaryotic Initiation Factors Gene Family AT4G34110 24.855 6.07e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0207 K13161 - gmx:100785076 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0207 13 2196534 2201310 Ahy13g0207 13 2196534 2201310 ECH