Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0187 ATGCGTCCCGAGGCACTAGTGTGTGAAGAATGCGCCAGCAGGTGTGTTTTGTTGCACGGAAACGAGAAGAAAAAATCGTCACTTTTTCCTCCTTCTTTCTTCAGGATCATGTTTGACAAGAACACTCCCACTATTATGTATCTTCCTGACAAGTTTAAACCTGCTGTAGCTGCCTCCGTTAATAAGAAAATCATTCTTGCTGACAAAAGTGGGGAGAGATGGAAAGTAACTTTATCCAAAGCCGGTAGTCACTTGGTTTTCAAGGAAGGATGGAATAAGTTTTCGTCGGACCATGGACTTGAACGTGGAGATATTCTGGTATTCCATCATGTTACTGATGTGCACTTTTATGTTACAATCTATGATAAATATGCTTGTGAAAAGCTTTGTTTTTCGAATACGAGAAATAAGACAAAACGTAGAAGGGACAGTAGTGTCTCTCCAGTTAGAGATGTCATGTTGGCTACACCAGATCAAAATGCGTCGGTTGTTTCTGAGCCAGATGCTAAAAAGACAAATAGCCAGAACAAAGTGGTTGGTGTAGGAGGAACACCAAATAATGTAGAGAATATTTCAAAACATGATAAGAGCAATGGAAGTGTCAAATCTACGAGAATGACAGAAAACTATGACAACACTGCGAAAATTACAACCAGAGAATCAAGAGTTTCTCCTGTCAACTACAAATTGTGCATGAATCCAGTCGATGCAATTCTATGCGACAACTCTCCTTCATTTGAAGAGAGATTCAGAGGAGCTGCTGCATTTTTGTCAGAAGCTGAACTATCTGGAAAAAAGGATTCTATTAGAAATACTGACAGAAGCACATACGATAATACTTCTACTTGCAAACTTGGAGAAAGAAAAGAGAAGAATGTTTTGAAAAGGGAAGTTAGAGAGTTCCAATATGCTGAGGACTTAGAAGGTGATAATAAGGTGGCAATGTCCAAGAAAGAACATGGCTTTCATATTGATGGATGTCTCAACACCAAACCAATGTTAAATGCCACACCGAATATCTCAGATGCTATTCGACTCAAAAGTGATCCTATGGCAACATCCAAGGGAAAACATGGATTGCAAATTGATGGATGTCCCAATACCAAACATATTGTCAATAATGGCATACCAAGGGTCTCAAGTGCTACTCAAAACGGCAAAATCTTAAAAAAGATTAAGAGCGAGCAGGCAGACAGGAATCCCAGTGAGGAGTGCACTTTTAAGGACAAAGTGTGTGCAAAAGGTGAAATGTCCAAAAGGATTAAAAAAGAGCCGCGTATGGATATGACTTACAACATGTCCAGATTCAAGGATGAATTCGAAGCCAGAGGTATTGAAGTTCCCAAAGGCTTTCCAAAGGTTATCAAGAAAGAGTTTGAGAAGAGTTCACACAAGACTGAACAAAATGATGATAACGATGATGACAGTGATAACGTTCAATTGGCAGAAGTTGTGCGCTGCGTGGTACCCGATCATAATGATAATTTTCTTGAATTGCCTTCACACTTGCATCAGTGCCGGAACTATAAAAATAACAGGATGGTGGTGATCCTGCAAGATCCACAGAAGAGACTATGGCCGGTTCTTTACCATGATCTTCATGATAAAAAAATGCATGGTACAAAAGCCTTTTATCTGATAAAAGGATGGTCACAATTTTACAGAGCCAATAATATTCAACCAGGAGATTTGTGTACTTTTGAACTTAAGGAGGAGGATAAACACATCTTCAATGTAGATATAAACCACAATTAA 1755 0.3909 MRPEALVCEECASRCVLLHGNEKKKSSLFPPSFFRIMFDKNTPTIMYLPDKFKPAVAASVNKKIILADKSGERWKVTLSKAGSHLVFKEGWNKFSSDHGLERGDILVFHHVTDVHFYVTIYDKYACEKLCFSNTRNKTKRRRDSSVSPVRDVMLATPDQNASVVSEPDAKKTNSQNKVVGVGGTPNNVENISKHDKSNGSVKSTRMTENYDNTAKITTRESRVSPVNYKLCMNPVDAILCDNSPSFEERFRGAAAFLSEAELSGKKDSIRNTDRSTYDNTSTCKLGERKEKNVLKREVREFQYAEDLEGDNKVAMSKKEHGFHIDGCLNTKPMLNATPNISDAIRLKSDPMATSKGKHGLQIDGCPNTKHIVNNGIPRVSSATQNGKILKKIKSEQADRNPSEECTFKDKVCAKGEMSKRIKKEPRMDMTYNMSRFKDEFEARGIEVPKGFPKVIKKEFEKSSHKTEQNDDNDDDSDNVQLAEVVRCVVPDHNDNFLELPSHLHQCRNYKNNRMVVILQDPQKRLWPVLYHDLHDKKMHGTKAFYLIKGWSQFYRANNIQPGDLCTFELKEEDKHIFNVDINHN* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0187 584 MobiDBLite consensus disorder prediction 159 194 - -
Ahy13g0187 584 MobiDBLite consensus disorder prediction 159 204 - -
Ahy13g0187 584 ProSiteProfiles B3 DNA-binding domain profile. 482 584 IPR003340 GO:0003677
Ahy13g0187 584 SUPERFAMILY DNA-binding pseudobarrel domain 485 579 IPR015300 -
Ahy13g0187 584 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 11 581 IPR044837 -
Ahy13g0187 584 SUPERFAMILY DNA-binding pseudobarrel domain 30 126 IPR015300 -
Ahy13g0187 584 CDD B3_DNA 493 581 IPR003340 GO:0003677
Ahy13g0187 584 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0905400-LIKE ISOFORM X1 11 581 - -
Ahy13g0187 584 ProSiteProfiles B3 DNA-binding domain profile. 31 124 IPR003340 GO:0003677
Ahy13g0187 584 Gene3D - 478 584 IPR015300 -
Ahy13g0187 584 Gene3D - 27 126 IPR015300 -
Ahy13g0187 584 SMART B3_2 484 580 IPR003340 GO:0003677
Ahy13g0187 584 SMART B3_2 38 124 IPR003340 GO:0003677
Ahy13g0187 584 CDD B3_DNA 31 122 IPR003340 GO:0003677
Ahy13g0187 584 Pfam B3 DNA binding domain 496 575 IPR003340 GO:0003677
Ahy13g0187 584 Pfam B3 DNA binding domain 45 123 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0187 Ahy-Chr13 2015623 2020807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0187 33 127 B3 DNA Binding Superfamily AT4G01580 26.042 1.91e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy13g0187 B3 7.20E-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0187 - - adu:107478866 1138.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0187 13 2015623 2020807 Ahy13g0187 13 2015623 2020807 ECH