Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0185 ATGGAACCTTCTGAATCAGAATCAGTTGGTTCCTCCACCACAACCACCACCAAAGACCCACAATTGGGTTCTCAGAATGAACCTTCTTCTCCTTTTCCCAATCATCATCACGATCCTCAACAATCAGAGCCAGATCTCAGTGAAAATTTGGGGTTGCAGGATGAAACTCGCGATGAACTTGGTGCAGAGTTCCACAAGAAGTTGGATTTGAAGGATGAGGATGAAAGGGTAGCTGAAAATGAGAAGAAAGATTCGGACTTTGTAGCTGGTAGTGGAGAATATGGTGGTGAGGAATTGGGTGGTGAAGGTGGTTGTGCCCCGGAAACAGGTGAAGCACAAGGGAGTGATGATAATGATGGTTGGGATGATGATGAGGGTTATGGCTGGAATGAGAATGTGAAAGAGAGTGAGGTTGATAAGGTAAGTGGAGATTTTGATGTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTGAAGTTGAAGGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAGCAGCGGTAGAGTTCAGCAGCAATATCCACTGAGGCCTGATGCTGAAGATTGTGCTTTCTATCTTAAAACTGGAAATTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTGGTAGGAGGAAGAGCCAGGCTGTTAAAGAGAAGGTTGGGGGAGAAAGAGAAGAACCGGCTGAAAAATCGGGCCAGATAGAATGCAAGTATTATTTAAGGTCGGGAGGATGTAAGTTTGGAAAAGCTTGTAAATTTAACCACACAAGAGGAAAGCCTTCAGCTGCGCCACTTTTGGAGCTTAACTTTCTTGGCCTGCCTATACGATTGGGAGAGAAACAATGTCCCTATTACATGCGCACAGGCTCCTGTAAGTTTGGAGCAAATTGCAAGTTTAATCATCCTGATCCTACTTCTGGTGGTAGAGTTGGGGATTCTGTTTCAGGATTTGGTAACGGTAATTATGTCCCTCTACAAGGCGCATCACAACCACCATCTGGTCCCTCGTGGTCATCTTCAAAAACATTAAATGATACTACTCCTTTTGTGCCAATGATGCTTTCGCCTAGTCAAGCGGTTTCTCCCCGAAGTCCTGAATGGAACGGATACCAGGCACCTGTCTATCTATCCGAGAGGGGTATGCACCAACCGCCGGCATATGTCATGAACAACCCAACAATCGAAACACCTATGTACATGCACCAACCAAAGCAGACGCCAATTGAAGAGTTTCCAGAAAGGCCTGGTGAACCCGAATGCAGCTACTTCTTAAAAACTGGGGATTGCAAGTTCAAATCCAATTGTAAATTCCATCATCCAAAGAATCGGGTTGCAAGAATACCTCCGTGCAACCTCAGTGACAAGGGCCTGCCTCTCAGACCTGACCAGAATGTATGCTCCCATTACAGCCGCTACGGGATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCGGTAATAAACCCATCTCCCCCAAGTAGTCCTGGACTTGATCAGCAAACTTCTTATGCAGACACGCCTAATGAGATGACTACGATGGAGGGAAATGGAGATGCCAATGATGAGGCAATTCGGCAGCCTGTTTAG 1602 0.4526 MEPSESESVGSSTTTTTKDPQLGSQNEPSSPFPNHHHDPQQSEPDLSENLGLQDETRDELGAEFHKKLDLKDEDERVAENEKKDSDFVAGSGEYGGEELGGEGGCAPETGEAQGSDDNDGWDDDEGYGWNENVKESEVDKVSGDFDVDVDGDGNGDDEVEVEGDEEVEKKKDRSSGRVQQQYPLRPDAEDCAFYLKTGNCKFGFNCKFNHPLGRRKSQAVKEKVGGEREEPAEKSGQIECKYYLRSGGCKFGKACKFNHTRGKPSAAPLLELNFLGLPIRLGEKQCPYYMRTGSCKFGANCKFNHPDPTSGGRVGDSVSGFGNGNYVPLQGASQPPSGPSWSSSKTLNDTTPFVPMMLSPSQAVSPRSPEWNGYQAPVYLSERGMHQPPAYVMNNPTIETPMYMHQPKQTPIEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRVARIPPCNLSDKGLPLRPDQNVCSHYSRYGICKFGPACKFDHPVINPSPPSSPGLDQQTSYADTPNEMTTMEGNGDANDEAIRQPV* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0185 533 Gene3D - 401 461 - -
Ahy13g0185 533 Gene3D - 462 520 - -
Ahy13g0185 533 Gene3D - 159 222 - -
Ahy13g0185 533 MobiDBLite consensus disorder prediction 127 147 - -
Ahy13g0185 533 MobiDBLite consensus disorder prediction 149 163 - -
Ahy13g0185 533 PANTHER PROTEIN PHOSPHATASE RELATED 13 533 - -
Ahy13g0185 533 ProSiteProfiles Zinc finger C3H1-type profile. 418 446 IPR000571 GO:0046872
Ahy13g0185 533 MobiDBLite consensus disorder prediction 1 37 - -
Ahy13g0185 533 SUPERFAMILY CCCH zinc finger 239 262 IPR036855 GO:0046872
Ahy13g0185 533 SUPERFAMILY CCCH zinc finger 186 214 IPR036855 GO:0046872
Ahy13g0185 533 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 13 533 - -
Ahy13g0185 533 MobiDBLite consensus disorder prediction 50 88 - -
Ahy13g0185 533 MobiDBLite consensus disorder prediction 492 533 - -
Ahy13g0185 533 MobiDBLite consensus disorder prediction 323 346 - -
Ahy13g0185 533 ProSiteProfiles Zinc finger C3H1-type profile. 234 262 IPR000571 GO:0046872
Ahy13g0185 533 SUPERFAMILY CCCH zinc finger 281 307 IPR036855 GO:0046872
Ahy13g0185 533 SMART c3hfinal6 280 307 IPR000571 GO:0046872
Ahy13g0185 533 SMART c3hfinal6 464 491 IPR000571 GO:0046872
Ahy13g0185 533 SMART c3hfinal6 418 445 IPR000571 GO:0046872
Ahy13g0185 533 SMART c3hfinal6 234 261 IPR000571 GO:0046872
Ahy13g0185 533 SMART c3hfinal6 185 212 IPR000571 GO:0046872
Ahy13g0185 533 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
Ahy13g0185 533 ProSiteProfiles Zinc finger C3H1-type profile. 280 308 IPR000571 GO:0046872
Ahy13g0185 533 MobiDBLite consensus disorder prediction 498 520 - -
Ahy13g0185 533 ProSiteProfiles Zinc finger C3H1-type profile. 464 492 IPR000571 GO:0046872
Ahy13g0185 533 SUPERFAMILY CCCH zinc finger 423 447 IPR036855 GO:0046872
Ahy13g0185 533 MobiDBLite consensus disorder prediction 309 346 - -
Ahy13g0185 533 MobiDBLite consensus disorder prediction 1 181 - -
Ahy13g0185 533 Gene3D - 225 310 - -
Ahy13g0185 533 SUPERFAMILY CCCH zinc finger 462 490 IPR036855 GO:0046872
Ahy13g0185 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 239 259 IPR000571 GO:0046872
Ahy13g0185 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 283 306 IPR000571 GO:0046872
Ahy13g0185 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 420 445 IPR000571 GO:0046872
Ahy13g0185 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 467 490 IPR000571 GO:0046872
Ahy13g0185 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 189 211 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0185 Ahy-Chr13 1964951 1968389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0185 182 491 C2H2 Transcription Factor Family AT3G02830 42.342 2.15e-75 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy13g0185 zf-CCCH 1.10E-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1518 11 66364040 66369303 Ahy13g0185 13 1964951 1968389 ECH
Ahy13g0185 13 1964951 1968389 Ahy13g0185 13 1964951 1968389 ECH