Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0179 ATGATGATATCAAGAAGCATTCTATTCTCTTTGGTTTTCTTGGTTTTCTCTTTTCTCATCCCTACCTTCATTTCCTCTTCCCCTCTCCAAGACCCTGAATTGGTAGTTCAAGAGGTGAATAGGCAAATCAATGCCTCCATTGCTAGGAGGAGCTTGTTAGCTAGTGATAGGAGAAACTTAGGGTACCTTTCATGTGGAAGTGGCAACCCCATTGATGATTGTTGGAGGTGTGATCCTAATTGGGAACAGAACAGACAGAAGCTAGCCGACTGCGCAATTGGGTTCGGAAAGAACGCAATTGGCGGTCGGGATGGTAAGATTTACGTGGTAGATGATTCTGAAGATGATGATCCAGTAAACCCTAAACCCGGAACCCTACGTCATGCAGTGATTCAGGACGAGCCATTATGGATCATATTCGCTAGGGATATGGTAATCAGACTGAAAGAAGAACTAATTATGAATTCTTACAAGACAATTGATGGAAGAGGAGCTAGTGTACACATTGCTAATGGTCCATGCATAACTATACAATATGTGACAAATGTGATTATACATGGAATTAACATACATGATTGTAAGCAAGGGGGGAATGCTATGGTGCGCGACTCTCCTAGGCACTACGGGTGGAGGACCGTATCGGACGGCGATGGCGTGTCGATCTTCGGTGGGGCCCACATTTGGGTGGACCATTGTTCATTGTCCAATTGCAATGATGGGTTGATTGATGCAATTCATGGGTCCACAGCAATCACAATATCTAACAATTACATGACACACCATGATAAGGTTATGTTGTTAGGTCATAGTGATGAATATACTCAAGACAAGAACATGCAAGTCACTATTGCTTTCAACCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGGTGTAGGCTTGGATACTTCCACGTGGTGAATAATGACTATACACATTGGGAGATGTATGCTATTGGAGGAAGTGCTAACCCTACCATTAATAGCCAAGGAAATAGATTTGTTGCACCCAATGATAGATTCAGCAAAGAGGTAACAAAGCATGAGGATGCAGCAGAGAGTGAATGGAAGAATTGGAATTGGAGATCAGAAGGGGACATGCTTGTTAATGGTGCATTCTTCACAGCTTCTGGTGCTGGTGCTTCTTCAAGCTATGCTAGGGCTTCTAGCCTCAGTGCTAGACCCTCTTCTCTTGTTGCTTCTATTACTACTTCTTCTGGTGCCCTTCTTTGCAAGAAAGGTTCTCCATGCTGA 1254 0.4338 MMISRSILFSLVFLVFSFLIPTFISSSPLQDPELVVQEVNRQINASIARRSLLASDRRNLGYLSCGSGNPIDDCWRCDPNWEQNRQKLADCAIGFGKNAIGGRDGKIYVVDDSEDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIRLKEELIMNSYKTIDGRGASVHIANGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGAHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDEYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAAESEWKNWNWRSEGDMLVNGAFFTASGAGASSSYARASSLSARPSSLVASITTSSGALLCKKGSPC* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0179 417 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Ahy13g0179 417 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Ahy13g0179 417 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Ahy13g0179 417 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Ahy13g0179 417 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Ahy13g0179 417 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Ahy13g0179 417 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Ahy13g0179 417 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Ahy13g0179 417 Pfam Pectate lyase 150 334 IPR002022 -
Ahy13g0179 417 Gene3D - 68 410 IPR012334 -
Ahy13g0179 417 PANTHER PECTATE LYASE 18-RELATED 12 414 IPR045032 GO:0030570
Ahy13g0179 417 SMART amb_all 143 340 IPR002022 -
Ahy13g0179 417 SUPERFAMILY Pectin lyase-like 69 408 IPR011050 -
Ahy13g0179 417 PANTHER PECTATE LYASE 12 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0179 Ahy-Chr13 1899864 1903683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0179 1 417 Polysaccharide Lyase AT5G63180 77.088 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0179 K01728 - gmx:100787082 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1509 11 65489718 65492015 Ahy13g0179 13 1899864 1903683 ECH
Ahy13g0179 13 1899864 1903683 Ahy13g0179 13 1899864 1903683 ECH