Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0116 ATGGCTAAGGGTCAATCCTCATCTTCTGATCACTCAATTTTTTTCCGAGGGGATACTGTTCTGGTTAAGGGGAAGAAGAGAAAGGACACTGTTTGCATTGTTCTTGCTGATGATCAGTGCGAAGAGCCGAGAATTCGGATGAACAAAGTTGTAAGGTCTAATCTTAGGGTTAGGCTTGGAGATGTTGTCTCTGTTCATCAATGTTCTGATGTCAAGTATGGGAAGCGAGTTCACATCCTTCCCATTGATGATACTATCGAGGGTGTCACTGGCAACTTGTTTGATGCATATCTCAAGCCATATTTTATGGAGTCGTACCGACCTGTGAGGAAAGGGGACTTGTTTCTTGTTAGAGGCGGAATGCGAAGTGTTGAATTCAAGGTGATAGAAACTGATCCTGGTGAATATTGTGTCGTGGCACCGGATACTGAAATCTTCTGCGAGGGAGAGCCGATTAAACGCGAGGATGAAGAGAGACTAAATGAAGTTGGCTATGATGATGTTGGGGGTGTTAGGAAGCAAATGGCTCAAATTCGTGAGCTCGTAGAACTTCCACTCAGGCATCCGCAACTCTTCAAATCGATCGGTGTTAAGCCCCCGAAAGGAATCTTGCTTTATGGACCGCCAGGTTCCGGGAAGACTCTGATTGCAAAAGCAGTTGCTAATGAGACAGGTGCGTTCTTCTTTTTGATCAATGGACCGGAAATCATGTCGAAGCTGGCTGGTGAAAGTGAAAGCAATCTGAGGAAGGCATTTGAAGAAGCCGAAAAGAATTCCCCTTCTATCATTTTTATTGATGAATTGGATTCAATTGCTCCAAAAAGAGAAAAGACACATGGTGAGGTAGAGAGGCGTATAGTATCGCAACTTTTGACTCTAATGGATGGCCTCAAGACCCGTTCGCATGTTATCGTGATCGGAGCAACAAATAGGCCCAACAGTATTGATCCTGCTTTGAGAAGGTTTGGAATGTTTGATCGCGAAATTGATATCGGTGTACCAGATGAAGTTGGAAGGTTGGAGGTTCTTAGAATTCATACTAAAAACATGAAGCTTTCTGATAATGTTGATCTTGAAAGAGTTGCAAGGGACACTCATGGTTATGTAGGAGCAGATCTTGCTGCTCTATGCACAGAGGCTGCGCTGCAGTGTATAAGAGAGAAGATGGATGTGATTGACTTGGAAGATGAATCAATAGATGCTGAGATTCTGAATTCCATGGCTGTTACCAATGAGCACTTCCAAACTGCTTTGACTTCTTCGAACCCGTCTGCGTTGCGTGAAACAGTTGTGGAGGTTCCAAATGTTTCCTGGGATGACATTGGAGGTCTAGAGAATGTTAAAAGGGAGCTTCAAGAGACGGTTCAATACCCGGTGGAACATCCTGAGAAGTTTGAGAAATTCGGCATGTCGCCTTCCAAAGGTGTTCTTTTCTATGGCCCTCCGGGCTGCGGCAAAACCCTGCTTGCAAAAGCTATTGCAAATGAATGCCAGGCTAACTTCATAAGTGTCAAGGGACCTGAGTTGCTTACTATGTGGTTTGGTGAAAGTGAGGCAAATGTTCGCGAGATATTCGACAAGGCCCGGCAGTCTGCACCATGTGTGCTTTTCTTTGATGAACTCGACTCTATTGCAACCCAGCGAGGAGGTTCAAGAGGGGATTCCGGCGGTGCTGATAGAGTGTTGAACCAACTACTAACAGAGATGGATGGAATGTCTGTTAAGAAAACAGTGTTCATCATTGGAGCAACAAACAGACCTGACATTATAGACCCTGCATTGCTTCGACCAAGACGTCTTGACCAATTGATATACATTCCTTTACCGGATGAGAGTTCACGTCTCCAGATCTTCAAGGCGTGCTTGAGGAAGTCACCAATCTCGAAGGACGTCGATCTTTCGGCTCTTGCTCGTTATACACATGGATTTAGTGGTGCAGACATTACTGAGATTTGTCAAAGAGCTTGCAAGTATGCCATTAGAGAAGATATTGAGAAGGACATTGAGATGGAGAGAAGAAAAATAGAGAGCCCTGAAGCCATGGAAGAAGATAATGAAGACACTGATGTAGTGGCTGAGATAAAACCATCACACTTTGAGGAGTCCATGAAGTTTGCTCGGAGGAGTGTCAGCGACGCCGACATCAGAAAATACCAACTGTTTGCTCAGACATTGCAACAGTCTCGCGGGTTCGGATTGGAGTTCCGGTTCGCAGATCGGACTACTGATACCACTTCTGCTGCTGGTGCCTCTGACCCTTTCTCATCTGCTACAGCTGAAGGAGATGATGATCTATATGGTTAA 2304 0.4497 MAKGQSSSSDHSIFFRGDTVLVKGKKRKDTVCIVLADDQCEEPRIRMNKVVRSNLRVRLGDVVSVHQCSDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIAKAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRSHVIVIGATNRPNSIDPALRRFGMFDREIDIGVPDEVGRLEVLRIHTKNMKLSDNVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVTNEHFQTALTSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGSRGDSGGADRVLNQLLTEMDGMSVKKTVFIIGATNRPDIIDPALLRPRRLDQLIYIPLPDESSRLQIFKACLRKSPISKDVDLSALARYTHGFSGADITEICQRACKYAIREDIEKDIEMERRKIESPEAMEEDNEDTDVVAEIKPSHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGLEFRFADRTTDTTSAAGASDPFSSATAEGDDDLYG* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0116 767 Pfam Cell division protein 48 (CDC48), N-terminal domain 14 69 IPR003338 -
Ahy13g0116 767 CDD AAA 169 332 - -
Ahy13g0116 767 SMART CDC48_N_2 1 71 IPR003338 -
Ahy13g0116 767 Gene3D - 426 608 IPR027417 -
Ahy13g0116 767 Gene3D - 6 70 - -
Ahy13g0116 767 Pfam AAA+ lid domain 630 671 IPR041569 -
Ahy13g0116 767 Pfam AAA+ lid domain 355 397 IPR041569 -
Ahy13g0116 767 Gene3D - 168 332 IPR027417 -
Ahy13g0116 767 ProSitePatterns AAA-protein family signature. 303 321 IPR003960 GO:0005524|GO:0016887
Ahy13g0116 767 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 14 740 - -
Ahy13g0116 767 Gene3D - 334 425 - -
Ahy13g0116 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 424 IPR027417 -
Ahy13g0116 767 SMART CDC48_2_2 88 154 IPR004201 -
Ahy13g0116 767 Gene3D - 612 722 - -
Ahy13g0116 767 Pfam Cell division protein 48 (CDC48), domain 2 90 153 IPR004201 -
Ahy13g0116 767 SUPERFAMILY ADC-like 14 68 IPR009010 -
Ahy13g0116 767 PANTHER AAA-FAMILY ATPASE 14 740 - -
Ahy13g0116 767 CDD AAA 442 608 - -
Ahy13g0116 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 723 IPR027417 -
Ahy13g0116 767 SUPERFAMILY Cdc48 domain 2-like 70 162 IPR029067 -
Ahy13g0116 767 ProSitePatterns AAA-protein family signature. 578 596 IPR003960 GO:0005524|GO:0016887
Ahy13g0116 767 MobiDBLite consensus disorder prediction 744 767 - -
Ahy13g0116 767 SMART AAA_5 472 610 IPR003593 -
Ahy13g0116 767 SMART AAA_5 199 335 IPR003593 -
Ahy13g0116 767 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 17 726 IPR005938 GO:0016787
Ahy13g0116 767 Pfam ATPase family associated with various cellular activities (AAA) 476 608 IPR003959 GO:0005524|GO:0016887
Ahy13g0116 767 Pfam ATPase family associated with various cellular activities (AAA) 203 332 IPR003959 GO:0005524|GO:0016887
Ahy13g0116 767 Gene3D - 71 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0116 Ahy-Chr13 1238758 1243332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0116 405 674 Calmodulin-binding Proteins AT3G56690 47.601 6.41e-79 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0116 K13525 - gmx:100798680 1395.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0116 13 1238758 1243332 Ahy13g0116 13 1238758 1243332 ECH