Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0012 ATGGTTGATTTTGTGTTGGTGGGATTTCTGTCCCTGCTGCTGGGATGTTGTTGTCCTGTTTATGGTGTTGGCGAAGGAGGTTGGAGCAATGCCCATGCAACCTTCTACGGCGGGGGTGATGCTGCTGACACAATGGGTGGAGCGTGTGGATATGGGAACCTGAACAGCGAAGGGTACGGGAGAAACACAGCAGCTGTGAGCAGTGCCCTCTTCAACGGAGGCCTGAGCTGCGGAGCATGCTTCCAGATCAAGTGCGTCAATGACAAGAGCTGGTGTCTGCCGAGGTCGGTGGTGGTCACGGCCACCAATTTCTGCCCTCCAAACCACGCCCTCCCTAGCACCGCCGGCGGATGGTGCAACCCTCCCCTCCACCACTTCGATCTGGCTCAGCCTGTCTTCCAACAGATTGCCAATGTCAGAGCTGGCATAGTCCCTGTTGCCTACACAAGGGTACCATGCCAAAAGAGAGGAGGCATGAGGTTCACCATCAACGGCCATGCATACTTCAACTTAGTACTAATCGGAAACGTTGGAGGTGCAGGCGATGTGCATGCCGTTTCAATCAAAGGCTCCAAAACCAATTGGCAATCCATGTCAAGGAACTGGGGTCAGAACTGGCAGAGCAACTCATACCTCAACGGCCAAACCCTCTCCTTCAAGGTTACCACCAGTGATGGCCGCACCTTGATCTCTAACAATGTTGCCCCTCCTTCCTGGTCCTTTGGCCAGACCTTCACGGGCCTACAATTCCCTTAA 756 0.5437 MVDFVLVGFLSLLLGCCCPVYGVGEGGWSNAHATFYGGGDAADTMGGACGYGNLNSEGYGRNTAAVSSALFNGGLSCGACFQIKCVNDKSWCLPRSVVVTATNFCPPNHALPSTAGGWCNPPLHHFDLAQPVFQQIANVRAGIVPVAYTRVPCQKRGGMRFTINGHAYFNLVLIGNVGGAGDVHAVSIKGSKTNWQSMSRNWGQNWQSNSYLNGQTLSFKVTTSDGRTLISNNVAPPSWSFGQTFTGLQFP* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0012 251 Pfam Lytic transglycolase 63 148 IPR009009 -
Ahy13g0012 251 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Ahy13g0012 251 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Ahy13g0012 251 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Ahy13g0012 251 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Ahy13g0012 251 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Ahy13g0012 251 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Ahy13g0012 251 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Ahy13g0012 251 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Ahy13g0012 251 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Ahy13g0012 251 PANTHER EXPANSIN 6 250 - -
Ahy13g0012 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Ahy13g0012 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 158 IPR007112 -
Ahy13g0012 251 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Ahy13g0012 251 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Ahy13g0012 251 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Ahy13g0012 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Ahy13g0012 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Ahy13g0012 251 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Ahy13g0012 251 Gene3D - 158 250 IPR036749 -
Ahy13g0012 251 Gene3D - 21 154 IPR036908 -
Ahy13g0012 251 SUPERFAMILY Barwin-like endoglucanases 27 176 IPR036908 -
Ahy13g0012 251 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Ahy13g0012 251 SMART dpbb_1 63 148 IPR007112 -
Ahy13g0012 251 PANTHER EXPANSIN-A15 6 250 IPR002963 GO:0009664
Ahy13g0012 251 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0012 Ahy-Chr13 149462 150877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0012 7 250 Expansin Gene Family AT2G03090 72.581 3.05e-136 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0012 - K20628 tcc:18604721 411.764