Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g3096 ATGATGAACCCTAACCCTAATAATAAAGGGAGTGAAGAAGGAGGAGTAATCCAGAAGAAAAAGAGAAACCATCCAGGAACACCAGACCCGGAAGCGGAGGTAATAGCGCTGTCGCCCAAGACGCTAATGGCCACAAACAGGTTCATATGCGAGATATGCAGCAAAGGGTTCCAGAGGGACCAGAACCTTCAGCTGCACAGGAGGGGACACAACCTGCCATGGAAGCTGAGGCAGAGATCCAACAAGGAGCCCGTGAGGAAGAAGGTGTACATCTGCCCGGAGAAGAGCTGCGTCCACCACGACGCCTCCAGGGCCCTGGGTGACCTCACCGGCATCAAGAAGCACTTCAGCAGGAAGCACGGCGAGAAGAAGTGGAAGTGCCACAAGTGCTCCAAGAAGTACGCCGTCCAATCCGATTGGAAGGCTCACAGCAAGACCTGCGGCACTCGCGAGTACAAATGTGATTGCGGCACCCTCTTCTCCAGGAAGGATAGCTTCATCACCCACAGAGCTTTCTGCGATGCTTTGGCTCTCGAGACCTCCTCCCTTCTCCTTCCCCCCTCCACTACAAATCTCAATTTCCACACCCAACAACCACCTCCTCCTCCTTCTCATGCCCTCATTCCTCCTCTTCATTTCAATCACTCCCCTAACTTATCCCTATGGCTCAACCATCATCAACAACACGCCACTTCCTCTCATGATAATAGTAATCTTGTCGGACTCTATCATCACAATGCGTCTTCTTCCTTGCCTTTACCTGACATTGTGCAAATGAATAACTTCACCCACAATAGTAATAGTGCAAACCACCTTTCACTCTCTTCCTCCTCACTACCTGCTATTGGAAAATCATCAGATAACTTGGCTTCTATTTATACTTCTGACGGTCAAAGCACCACCACCGATAACAATAACAACCAATTATCTCCCATGTCAGCAACCGCACTTCTTCAGAAAGCAGCTCAGATGGGTTCCACAAGATCAACCACCACTCCTTCCATTTTCAGTGCTACTTTTGGGGTAATGACCTCCTCATCATCTAATAATTCAAACCATAATGCTCATGCTGGGGATTTTGCTTCAACTAGTAGCTTCAGCTCATTCACGCATTCTTCCAACACTTATGATCACCTAGTTATGCAAACTGCAGCTCAAAATAGTACCACGGATCCTGCGGGGAACTTGAAGCTCCCTCATCATGCCGGTTCAAACTCAGCGTCGATGGAACATAACTTGACGAGAGATTTTCTCGGGGTCAGCGGTGCTGGTGAAGGACCCGCTGGCCTTCATCAGTTCCTACCACAAGAGCTTGCAAAGTTTGCTTCTTCCATGGGGCTCACCCAATTCACTACCAATTAG 1362 0.4905 MMNPNPNNKGSEEGGVIQKKKRNHPGTPDPEAEVIALSPKTLMATNRFICEICSKGFQRDQNLQLHRRGHNLPWKLRQRSNKEPVRKKVYICPEKSCVHHDASRALGDLTGIKKHFSRKHGEKKWKCHKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALALETSSLLLPPSTTNLNFHTQQPPPPPSHALIPPLHFNHSPNLSLWLNHHQQHATSSHDNSNLVGLYHHNASSSLPLPDIVQMNNFTHNSNSANHLSLSSSSLPAIGKSSDNLASIYTSDGQSTTTDNNNNQLSPMSATALLQKAAQMGSTRSTTTPSIFSATFGVMTSSSSNNSNHNAHAGDFASTSSFSSFTHSSNTYDHLVMQTAAQNSTTDPAGNLKLPHHAGSNSASMEHNLTRDFLGVSGAGEGPAGLHQFLPQELAKFASSMGLTQFTTN* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g3096 453 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 446 - -
Ahy12g3096 453 Gene3D Classic Zinc Finger 83 173 - -
Ahy12g3096 453 SMART c2h2final6 48 70 IPR013087 -
Ahy12g3096 453 SMART c2h2final6 125 145 IPR013087 -
Ahy12g3096 453 SMART c2h2final6 90 120 IPR013087 -
Ahy12g3096 453 PANTHER ZINC FINGER PROTEIN JACKDAW 3 446 IPR033243 GO:0003700
Ahy12g3096 453 MobiDBLite consensus disorder prediction 1 31 - -
Ahy12g3096 453 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Ahy12g3096 453 SUPERFAMILY beta-beta-alpha zinc fingers 47 145 IPR036236 -
Ahy12g3096 453 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 70 IPR013087 -
Ahy12g3096 453 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g3096 Ahy-Chr12 120397761 120399883 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g3096 17 355 IDZ Gene Family AT5G66730 51.031 6.70e-112 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy12g3096 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g3096 K25870 - adu:107463670 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g3096 12 120397761 120399883 Ahy2g2679 2 102799836 102801958 hybridization
Ahy16g1586 16 39681018 39683460 Ahy12g3096 12 120397761 120399883 PCT
Ahy6g1425 6 28443647 28446057 Ahy12g3096 12 120397761 120399883 PCT
Ahy12g3096 12 120397761 120399883 Ahy16g1586 16 39681018 39683460 PCT
Ahy12g3096 12 120397761 120399883 Ahy6g1425 6 28443647 28446057 PCT