Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g3047 ATGGGGGGTAAATGTCCGCACAGGAGCGTCAAGAAAAGGAGATACTCTCACAAAACCGCACGCCGCACCAAATTCCTCATCAAAGGTGATGACATGGTTTACGATCAGCTAAACAAGGCTGATGAAGAGAGACCTTTACCTGTTGATGAAGATTTGCCTGGGATGGGACAGTACTATTGCCTTCACTGCGATCGGTATTTTTCCAATGTAGCTGTGAGGGATGAGCATTTTAAGACCAAAAAACACAAGAAGCGTGTAAAACAAATGATGGGTCCTGCACCTCATACTCAACTTGATGCTGAACTAGCTGCTGGAATGGGAATGCCAGACAATGGACCAAAGTTGATGTCTATGTAA 357 0.4482 MGGKCPHRSVKKRRYSHKTARRTKFLIKGDDMVYDQLNKADEERPLPVDEDLPGMGQYYCLHCDRYFSNVAVRDEHFKTKKHKKRVKQMMGPAPHTQLDAELAAGMGMPDNGPKLMSM* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g3047 118 SUPERFAMILY beta-beta-alpha zinc fingers 45 109 IPR036236 -
Ahy12g3047 118 MobiDBLite consensus disorder prediction 1 20 - -
Ahy12g3047 118 ProSitePatterns Zinc finger C2H2 type domain signature. 60 82 IPR013087 -
Ahy12g3047 118 Pfam Zinc-finger double-stranded RNA-binding 57 83 IPR022755 -
Ahy12g3047 118 SMART ZnF_U1_5 55 89 IPR003604 GO:0003676|GO:0008270
Ahy12g3047 118 PANTHER EXPRESSED PROTEIN 1 118 - -
Ahy12g3047 118 Gene3D Classic Zinc Finger 45 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g3047 Ahy-Chr12 120012800 120014482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g3047 3 117 C2H2 Transcription Factor Family AT2G36930 76.724 1.08e-62 187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g3047 12 120012800 120014482 Ahy2g2632 2 102414875 102416557 hybridization