Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g3030 ATGTCTAATCCCTATGATCACGGAGCTTCTCCATTTATGCACCTAAGTGAGAGAGAGAGAGAGAGAGTGAAACTCTTCCAAAGAAGCAGAAGAATAATGTTCCAAAGAAGGTGCATTGTGGTAACAATAACATATGTATTATTTGGATGCATTATTGTGGATCATGGAAGAGCAACAATGGTGAATCTCACACTCCAAGGACAACATCCAAACCCTGAAGCTCTTGTTACACAACTTCATAGTAAGATTAATGCTTCAATAGCAAGAAGGGAGATGTTAGCATCATCATCATCATGCCTAACAGGGAACCCCATTGATGATTGCTGGAAATGTGACCCAAATTGGGCCCAAAACAGACAAAGGCTAGCCGATTGCGCAATTGGGTTCGGTCAAAACGCAAAGGGGGGAAAAGGTGGCGAGTTCTACATAGTAACCGATTCGTCAGACAATGATGCTGTAAACCCTAAACCCGGAACCCTAAGATATGCCGTGATTCAAAATGAGCCACTTTGGATAGTGTTTCCTAGTAACATGATGATTAAGCTTTCACAAGAACTCATCTTCAATAGCTTCAAGACCATTGATGGGCGTGGTGCTGATGTGCACATTGTTGGTGGAGGGTGCATTACTCTTCAATATATTAGCAATGTTATCATACATAACATTCACATTCACCATTGTCACCCCTCAGGTAATGCTATGGTGCGATCGAGTCCAGAGCACTATGGATACCGCACTGAATCGGACGGTGATGGCATATCCATATTTGGATCGCATGACATCTGGATCGATCACTGCACTCTATCTCGTTGCAAGGATGGGCTTATTGATGCAGTTATGGGCTCAACTGCCATCACTGTGTCCAACAACCACTTTTCTCATCACAATGACGTAATGCTCTTGGGCCATAGTGACCACTACTTACCTGACTCAGCCATGCAGGTTACCATTGCCTTTAACCATTTCGGCGAAAAACTCGTCCAGCGCATGCCACGTTGCAGGCTAGGATATGTTCACATAGTCAATAACGACTTCACTGCTTGGCAGATGTATGCAATCGGGGGCAGTGGATCCCCTACTATTAATAGTCAGGGGAATCGATACACTGCTCCGGACAACTCATTTGCCAAGCAAGTGACAAAGCGGTTGGATGTCGGGGAAGGCGAGTGGACAGGGTGGAATTGGAGGTCAGAAGGGGATGTGATGGTGAATGGAGCATTCTTTGTTCCATCAGGGGAAGGTGCTGAGGTTAAGTATGAGAAGGCTTATAGTGTGGAGCCTAAGTCTGCGGATCGCATTTCATTGCTTACTATGTCTGCTGGAGTTCTTGGTGTGGCTAGGGACAATAACCTTGGCATGTGGACTAGAGGACCCAACGATGGTGGCAGTTATATTTCAACAAACGGTCCAGAATTCACTGATGAAATGTCAAAGGCTGCAATGCTGTTTCCACCTTCACATACTTTCACATTTGTATCTGTTCTTGTTACAATGCTCTGCTTGTTATCTCACACAATTACTCCCCTAATAACATTAGTACTATAA 1545 0.4447 MSNPYDHGASPFMHLSERERERVKLFQRSRRIMFQRRCIVVTITYVLFGCIIVDHGRATMVNLTLQGQHPNPEALVTQLHSKINASIARREMLASSSSCLTGNPIDDCWKCDPNWAQNRQRLADCAIGFGQNAKGGKGGEFYIVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNAMVRSSPEHYGYRTESDGDGISIFGSHDIWIDHCTLSRCKDGLIDAVMGSTAITVSNNHFSHHNDVMLLGHSDHYLPDSAMQVTIAFNHFGEKLVQRMPRCRLGYVHIVNNDFTAWQMYAIGGSGSPTINSQGNRYTAPDNSFAKQVTKRLDVGEGEWTGWNWRSEGDVMVNGAFFVPSGEGAEVKYEKAYSVEPKSADRISLLTMSAGVLGVARDNNLGMWTRGPNDGGSYISTNGPEFTDEMSKAAMLFPPSHTFTFVSVLVTMLCLLSHTITPLITLVL* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g3030 514 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Ahy12g3030 514 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Ahy12g3030 514 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Ahy12g3030 514 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Ahy12g3030 514 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Ahy12g3030 514 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Ahy12g3030 514 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Ahy12g3030 514 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Ahy12g3030 514 SMART amb_all 177 374 IPR002022 -
Ahy12g3030 514 Gene3D - 102 444 IPR012334 -
Ahy12g3030 514 Pfam Pectate lyase 186 366 IPR002022 -
Ahy12g3030 514 SUPERFAMILY Pectin lyase-like 98 430 IPR011050 -
Ahy12g3030 514 PANTHER PECTATE LYASE 18-RELATED 35 467 IPR045032 GO:0030570
Ahy12g3030 514 PANTHER PECTATE LYASE 35 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g3030 Ahy-Chr12 119842477 119846078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g3030 32 506 Polysaccharide Lyase AT3G53190 69.295 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g3030 K01728 - gmx:100815062 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g3030 12 119842477 119846078 Ahy2g2615 2 102244552 102248153 hybridization