Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g3028 ATGGAGGAGGTTCAATTAGAGGAACAACAACATCAACTTCTTGTTAAAGGCAAACGAAGCAAGCGGCCGCGGCCGCCTTATTCGCCTTCGCCATCACCACCACCACCACTTGAATTTGCACCAATCATCCTCAAAAGAAACAACAACAACATGATGATGATGCCACCACCAACTACTAGTAATAGTGCAACTACTAGCACAACATTAGATGATGAAAACATGGCTTATTGTCTCATTCTATTGGCACAAGGACACCACCACCATCATCATCATCATAATAAAGCATCATCATCATCATCAGCACCATCATCACATCATGATGATCATCATGAGAAAAAGAATATCTACCAATGCAAGACGTGTAACAAATCATTCCCTTCATCTCAAGCACTTGGTGGACATAGAGCTAGCCACAAGAAATTATTATTACCAAACAACAAATCAAAGAGAAATAATAATAATGCTTATGACCATGATCATGAATTAGAGGACCTCAACACAACAACAACAACAACAAAAACAACAAGCACCATGCTCTCGTTGCAAGTATCATCATCAAATACCACAATAATAACAAAAAGAATTAGTACTAATAATAATAGTGCTAATAATAGTAGAAAATGCAAGCTACATGAATGTTCTATTTGTGGTGCTGGATTCTCATCCGGCCAAGCATTAGGGGGTCATATGAGAAGGCATAGAAATTTTGATGAAGGTGACAAAAACAAGAAACCAAGGAATCATTTTTTGAAGCTGGATTTGAATCTTCCAGCATCACCGGAAGATCATGATCAAAGAGAATCATCTAAGTTCCCATTTCAAATAAGGGAGAAAGTTATTGTCTTCTCTTCTTCTGCACCTTCTTTGGTGGATTGTCATTACTGA 885 0.3797 MEEVQLEEQQHQLLVKGKRSKRPRPPYSPSPSPPPPLEFAPIILKRNNNNMMMMPPPTTSNSATTSTTLDDENMAYCLILLAQGHHHHHHHHNKASSSSSAPSSHHDDHHEKKNIYQCKTCNKSFPSSQALGGHRASHKKLLLPNNKSKRNNNNAYDHDHELEDLNTTTTTTKTTSTMLSLQVSSSNTTIITKRISTNNNSANNSRKCKLHECSICGAGFSSGQALGGHMRRHRNFDEGDKNKKPRNHFLKLDLNLPASPEDHDQRESSKFPFQIREKVIVFSSSAPSLVDCHY* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g3028 294 MobiDBLite consensus disorder prediction 1 40 - -
Ahy12g3028 294 MobiDBLite consensus disorder prediction 24 40 - -
Ahy12g3028 294 MobiDBLite consensus disorder prediction 87 112 - -
Ahy12g3028 294 MobiDBLite consensus disorder prediction 1 15 - -
Ahy12g3028 294 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Ahy12g3028 294 ProSitePatterns Zinc finger C2H2 type domain signature. 213 233 IPR013087 -
Ahy12g3028 294 SUPERFAMILY beta-beta-alpha zinc fingers 113 139 IPR036236 -
Ahy12g3028 294 SMART c2h2final6 116 138 IPR013087 -
Ahy12g3028 294 SMART c2h2final6 211 233 IPR013087 -
Ahy12g3028 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 211 238 IPR013087 -
Ahy12g3028 294 Gene3D Classic Zinc Finger 90 177 - -
Ahy12g3028 294 Gene3D Classic Zinc Finger 184 269 - -
Ahy12g3028 294 MobiDBLite consensus disorder prediction 230 246 - -
Ahy12g3028 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 138 IPR013087 -
Ahy12g3028 294 MobiDBLite consensus disorder prediction 128 162 - -
Ahy12g3028 294 MobiDBLite consensus disorder prediction 227 246 - -
Ahy12g3028 294 PANTHER ZINC FINGER PROTEIN ZAT5 49 294 - -
Ahy12g3028 294 PANTHER ZINC FINGER PROTEIN ZAT5 49 294 - -
Ahy12g3028 294 SUPERFAMILY beta-beta-alpha zinc fingers 209 235 IPR036236 -
Ahy12g3028 294 Pfam C2H2-type zinc finger 116 140 - -
Ahy12g3028 294 Pfam C2H2-type zinc finger 211 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g3028 Ahy-Chr12 119827169 119828313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g3028 13 294 C2H2 Transcription Factor Family AT5G03510 34.416 7.30e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy12g3028 zf-C2H2_6 1.70E-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g3028 12 119827169 119828313 Ahy19g2334 19 137443075 137444714 ECH
Ahy12g3028 12 119827169 119828313 Ahy12g3028 12 119827169 119828313 ECH
Ahy12g3028 12 119827169 119828313 Ahy18g0541 18 5266612 5268280 ECH
Ahy12g3028 12 119827169 119828313 Ahy13g0276 13 2797332 2798735 ECH
Ahy12g3028 12 119827169 119828313 Ahy2g2613 2 102229244 102230388 hybridization
Ahy16g1696 16 59206202 59207612 Ahy12g3028 12 119827169 119828313 PCT
Ahy6g1521 6 47870659 47872090 Ahy12g3028 12 119827169 119828313 PCT
Ahy12g3028 12 119827169 119828313 Ahy16g1696 16 59206202 59207612 PCT
Ahy12g3028 12 119827169 119828313 Ahy6g1521 6 47870659 47872090 PCT