Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2972 ATGGAAATGGAAGATCATCATCACCAACTTCATCATCAGCAGAACCACCACTACGGTTGTTTAACCGATCTGTTAATGAACAACGCTCCTATGCACCAATCCCAACCACCGCAACCACCAATAACACTAGGCGGAGCCACCAGCCACCACCAGCAGCACCACCACCGCAACCTGCCACCGTTGCCGGAGACAACGATGACGATGTTTGAGATGATGGGAGCGCCACGTGGGGTGGTTATGAATAGCGAGTTGGCATCAACAACGAGAGGATCAGGTGTGGGAGGGTGCATGGGTGGGGATGCATCCTCAAACAACGGAAGATGGCCAAGACAAGAGACTCTCACTCTTCTTGAGATCAGATCTAAGCTTCACCCTAAATTCAAAGATGCTAATCACAAAGGTCCCTTGTGGGAACAAGTCTCCAGGATAATGTTAGAAGAACATGGATACCAAAGGAGTGGAAAGAAATGCAGGGAGAAGTTTGAGAATCTGTACAAATATTATAAGAAGACAAAGGAAGGAAAAGCAGCAAGACAAGATGGGAAGCATTATAGGTTCTTTCGCCAACTTGAAGCCTTGTTTGGAGACAACAACAACAATTCCAACAACTTTGTTACCAACAACAACCTTATTAATTTACAAACAAATCAAGACAAGTTTCATAATCATCATTATTCTCATCACCATCACAATAACAATAATAATAATAGTGTTAGCCTCATCACAAACTCCACTAGTGAGTTTGACACATCATCATCATCAGAGACCGATGATGATGATGAATCGAGGAAGAAGAAGAGGAGGAGGTGGAAGATGAAGATGAAGATGAAGGAGTTCATTGACTCACAAATGAGCAAGCTTGTGAAGAAGCAAGAGGAATGGCTTGAGAAGTTAGTGAAGACAATGGAAGAGAAAGAGAAGGAAAGAGTGGTGAGAGAAGAAGAATGGAGAAGAGAAGAGGCAACTAGGTTGGAGAAGGAGCACATGTTTTGGGCCAAAGAAAGAGCATGGATTGAAGCAAGGGATGCTGCATTAATGGATTCTTTTAACAAGTTAACAAGGAGAAGGGAAATCATCAAGGCTGAAGAACAAGAACATGATCAAGAAGCTCCTCATCATCATCAAGACGATGGTGTGATGATGATGATGATGATGATGGGAGACGAAGAAATTATCAAAAATCATAACGAGGATAACAACGAAGATATTAGAGAAAAATACATGTATCTTTCGGAAGCACATTTAATACATGCACCAGAAACATCTACAGCTACTCATTTTCAGTTGTAA 1290 0.4202 MEMEDHHHQLHHQQNHHYGCLTDLLMNNAPMHQSQPPQPPITLGGATSHHQQHHHRNLPPLPETTMTMFEMMGAPRGVVMNSELASTTRGSGVGGCMGGDASSNNGRWPRQETLTLLEIRSKLHPKFKDANHKGPLWEQVSRIMLEEHGYQRSGKKCREKFENLYKYYKKTKEGKAARQDGKHYRFFRQLEALFGDNNNNSNNFVTNNNLINLQTNQDKFHNHHYSHHHHNNNNNNSVSLITNSTSEFDTSSSSETDDDDESRKKKRRRWKMKMKMKEFIDSQMSKLVKKQEEWLEKLVKTMEEKEKERVVREEEWRREEATRLEKEHMFWAKERAWIEARDAALMDSFNKLTRRREIIKAEEQEHDQEAPHHHQDDGVMMMMMMMGDEEIIKNHNEDNNEDIREKYMYLSEAHLIHAPETSTATHFQL* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2972 429 MobiDBLite consensus disorder prediction 89 108 - -
Ahy12g2972 429 Coils Coil 288 315 - -
Ahy12g2972 429 MobiDBLite consensus disorder prediction 222 241 - -
Ahy12g2972 429 Gene3D - 108 170 - -
Ahy12g2972 429 MobiDBLite consensus disorder prediction 28 61 - -
Ahy12g2972 429 CDD GT1 107 172 - -
Ahy12g2972 429 Pfam Myb/SANT-like DNA-binding domain 107 193 IPR044822 -
Ahy12g2972 429 ProSiteProfiles Myb-like domain profile. 100 165 IPR001005 -
Ahy12g2972 429 PANTHER - 48 379 - -
Ahy12g2972 429 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 48 379 - -
Ahy12g2972 429 MobiDBLite consensus disorder prediction 28 48 - -
Ahy12g2972 429 MobiDBLite consensus disorder prediction 246 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2972 Ahy-Chr12 119322111 119325344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2972 107 358 Trihelix Transcription Factor Family AT5G03680 56.391 2.59e-88 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ahy12g2972 Myb_DNA-bind_4 1.10E-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2972 - - aip:107628057 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2972 12 119322111 119325344 Ahy12g2972 12 119322111 119325344 ECH
Ahy12g2972 12 119322111 119325344 Ahy2g2557 2 101724186 101727419 hybridization
Ahy16g1823 16 89042166 89045774 Ahy12g2972 12 119322111 119325344 PCT
Ahy12g2972 12 119322111 119325344 Ahy16g1823 16 89042166 89045774 PCT