Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2971 ATGCATTCTACTTCTGGTTCTACTTCTACTGGCCGTCACCCCGTGTATCGCGGGGTGAGGCGTAGAAGTAGTGGCAAATGGGTGTCGGAAATTCGGGAGCCGAAGAAGCCTAATAGAATTTGGTTAGGGACATATCCTACTCCAGAAATGGCTGCAGTTGCATATGATGTCGCCGTCCTTGCCCTAAAAGGCAAAGACGCCGAGTTAAACTTCCCTAACTTGGCTTCTTCGCTCCCGGTTCCGGCTACCTTATCCCCACGTGACATTCAAATGGCTGCGGCTAGTGCTGCCGCGGCGGCCGGAGCAGCAAAAGATGCCCTAAATGCTGAAGGATCAAGTTCAAGCCAAGGGAATATTAATAAAAGCAATGAAAATAATAATAATAATGTTCCTTCATCATCAATGGCACATGATTTTGTGGATGAGGATTTGATCTTTGACATGCCTAATGTTCTTGTGAACATGGCAGAAGGAATGCTTCTTAGTCCTCCTCCTTTTGACATTGGTGGTGGTGAAGATGAACCAGAAAACATGGATGATGAGCCAAGCCTGTGGAATTTCCCTTAA 567 0.4656 MHSTSGSTSTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTYPTPEMAAVAYDVAVLALKGKDAELNFPNLASSLPVPATLSPRDIQMAAASAAAAAGAAKDALNAEGSSSSQGNINKSNENNNNNVPSSSMAHDFVDEDLIFDMPNVLVNMAEGMLLSPPPFDIGGGEDEPENMDDEPSLWNFP* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2971 188 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Ahy12g2971 188 MobiDBLite consensus disorder prediction 108 134 - -
Ahy12g2971 188 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Ahy12g2971 188 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Ahy12g2971 188 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Ahy12g2971 188 MobiDBLite consensus disorder prediction 164 188 - -
Ahy12g2971 188 MobiDBLite consensus disorder prediction 1 28 - -
Ahy12g2971 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 5 188 - -
Ahy12g2971 188 Pfam AP2 domain 14 64 IPR001471 GO:0003700|GO:0006355
Ahy12g2971 188 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Ahy12g2971 188 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Ahy12g2971 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 188 - -
Ahy12g2971 188 SUPERFAMILY DNA-binding domain 15 73 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2971 Ahy-Chr12 119310579 119311336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2971 11 188 AP2-EREBP Transcription Factor Family AT2G36450 62.162 1.93e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy12g2971 AP2 1.20E-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2971 - - vvi:100261339 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2971 12 119310579 119311336 Ahy12g2971 12 119310579 119311336 ECH
Ahy12g2971 12 119310579 119311336 Ahy2g2556 2 101712654 101713411 hybridization
Ahy6g1581 6 63332857 63334002 Ahy12g2971 12 119310579 119311336 PCT