Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2970 ATGCAAAAAAGAAAGGCAGGGAGGAAGAAATTCCAAGAGACAAGGCACCCTATTTACAAAGGTGTGAGGCAAAGGAATGGAAAATGGGTTTGTGAGCTTAGACAACCAAACAACAAAACTAGGGTTTGGCTTGGAACTTTTTCTCACCCTCAAATGGCGGCTATAGCCCATGATGTCGCTGCCTTGGCCTTCCGGGGCGACAATGCTTCCCTAAACTTTCCTCAGTCGGCTGCCTCGCTGCCTCGACTCAATGCTGAAACCACTTCTCTCAAAAGCATCCAGATAACTGCGACGCAGGTCGCGAACAATCACTTTATTGAAGGCACAGAAGAGATCATGAGTATCCGTGGAAGTAATGATGGTTCTTCTCATGAGGAGGAGTTGTCTTCGGATAGTAGTTTTGGAGAAGATTCTAGAAGCTTCTATTGGGATGAAGAGGAAGTGTTTAACATGCCAGGGTTGATGAATAGCTTGGCTGAAGCCTTGATTATAACTCCACCGGCTTTGGAAAGAGGCTTCAATTGGGTTGGTGTAGAAACTACTATAGATTTAACTCTATGGGGTGATTAA 570 0.4509 MQKRKAGRKKFQETRHPIYKGVRQRNGKWVCELRQPNNKTRVWLGTFSHPQMAAIAHDVAALAFRGDNASLNFPQSAASLPRLNAETTSLKSIQITATQVANNHFIEGTEEIMSIRGSNDGSSHEEELSSDSSFGEDSRSFYWDEEEVFNMPGLMNSLAEALIITPPALERGFNWVGVETTIDLTLWGD* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2970 189 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Ahy12g2970 189 MobiDBLite consensus disorder prediction 120 137 - -
Ahy12g2970 189 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Ahy12g2970 189 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Ahy12g2970 189 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Ahy12g2970 189 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Ahy12g2970 189 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 8 187 - -
Ahy12g2970 189 MobiDBLite consensus disorder prediction 115 137 - -
Ahy12g2970 189 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
Ahy12g2970 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 187 - -
Ahy12g2970 189 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Ahy12g2970 189 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2970 Ahy-Chr12 119306158 119306840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2970 3 187 AP2-EREBP Transcription Factor Family AT4G25470 47.594 9.71e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy12g2970 AP2 1.50E-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2970 - - aprc:113870892 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2970 12 119306158 119306840 Ahy12g2970 12 119306158 119306840 ECH
Ahy12g2970 12 119306158 119306840 Ahy2g2555 2 101708233 101708915 hybridization
Ahy12g2970 12 119306158 119306840 Ahy6g1581 6 63332857 63334002 PCT