Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2864 ATGGATAATGAAATTGAAGTTCCTCAATATTTCATATGTCCAATTTCACTTCAAATCATGAAGGATCCTGTGACTGCCATAACAGGAATCACATATGATAGAGAAAGCATTGAGAAATGGCTTTTCAAGAACAAGAACACAACATGTCCAGTTACCAAAATGCCCCTACCAAATGATTCTGATCTTACACCAAACCATACCCTTCGACGTTTGATCCAAGCATGGTGCACTCAAAATTCTTCACTGGGAATTGATAGAATCCCAACACCAAAGCCCCCACTTAACAAAGTTCAAGTTTTGAAGCTCCTTAAGGATCTTAAGGATCCAAGATTGAAGATCAAGAGCTTAAGGCAATTGGAGCTTCTTGCAACTGAAAATGAGAGGAACAAGAAGTGTTTGCTTGATTCTGGTGTCCCAAAAGCCATGATCATGTTCATGTTGGATTGTTACAAAAAGGGTATCAATCAAATTGGTGAAGGTATTGAAGAAGCTCTTAGTTTGTTACAATTTGTTAAGGTTTCTTCCGAGGATGTTAAGATTCTTATGTCCGAGAATGTTTTTGATTTGGTGTTGGATTCTCTAACATGGCTTCTGGGGTGCGATTTTTCGGAGAATTCGGCGACTGTAAAATCACAAGCTGTTCTAGTGATCAAGAACTTGATCCAAAGGGGTGATTCAAGTGTTATTCAGAGGCTTAAATTTGAGTTCTTTGAGAAGATTGTGAAGGTTTTGAGAAATGGTGTTGTAACACAACAAGGTATTAGCGGCGCTTTGAAAGTGTTGCTAAGTGCTTGTGCGTATGGAAGAAACAGGATCATGATGGTGGAATGTGGTGCAGTTTTTGAGATGATTGAGATTGAAATGAGAACACCTGAGAAGATAATCACTGAATTAACAATGTCTATTCTGTTTCATCTATGTTCATGTGCTAGTGGAAGAGCTCAATTCTTGTGTCACAAAGGTTCAATGGCGGTTTTGACTGAAAGGATTTTGAAGGTTTCAGCGGCGGTTGATGATAGAGCTATAATTATTCTATCATTGATATCCAAATTCTCTGCTACAAATTTGGTGCTTCAAGAGATGTTGAAGGTTGGAACTGTTGCAAAGCTTTGTTTGGTTCTTCAGAGTGATCATGCAAAGTACATCAAAGAAAAAGCAATGGAAATTATTAAGAATCATTCTCAGGTTTGGAGGAACTCTCCTTGTTTTCCTGATAAGTCTTCTTTTTTTGGCAAGTTTGCATAA 1245 0.3791 MDNEIEVPQYFICPISLQIMKDPVTAITGITYDRESIEKWLFKNKNTTCPVTKMPLPNDSDLTPNHTLRRLIQAWCTQNSSLGIDRIPTPKPPLNKVQVLKLLKDLKDPRLKIKSLRQLELLATENERNKKCLLDSGVPKAMIMFMLDCYKKGINQIGEGIEEALSLLQFVKVSSEDVKILMSENVFDLVLDSLTWLLGCDFSENSATVKSQAVLVIKNLIQRGDSSVIQRLKFEFFEKIVKVLRNGVVTQQGISGALKVLLSACAYGRNRIMMVECGAVFEMIEIEMRTPEKIITELTMSILFHLCSCASGRAQFLCHKGSMAVLTERILKVSAAVDDRAIIILSLISKFSATNLVLQEMLKVGTVAKLCLVLQSDHAKYIKEKAMEIIKNHSQVWRNSPCFPDKSSFFGKFA* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2864 414 CDD RING-Ubox_PUB 11 53 IPR045210 -
Ahy12g2864 414 Pfam U-box domain 7 80 IPR003613 GO:0004842|GO:0016567
Ahy12g2864 414 PANTHER WDSAM1 PROTEIN 4 406 IPR045185 GO:0061630
Ahy12g2864 414 SUPERFAMILY ARM repeat 99 393 IPR016024 -
Ahy12g2864 414 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Ahy12g2864 414 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Ahy12g2864 414 SUPERFAMILY RING/U-box 5 85 - -
Ahy12g2864 414 Gene3D - 96 400 IPR011989 -
Ahy12g2864 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Ahy12g2864 414 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 4 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2864 Ahy-Chr12 118276162 118277713 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2864 2 403 U-box Gene Family AT3G11840 42.117 2.13e-114 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2864 - - lja:Lj0g3v0014579.1 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2864 12 118276162 118277713 Ahy12g2864 12 118276162 118277713 ECH
Ahy12g2864 12 118276162 118277713 Ahy2g2452 2 100678237 100679788 hybridization