Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2850 ATGAACGACCTATTTTCCGGTTCCTTCTCCCGCTTGCGCAACGAGCGTACTTCACCGGACCGCCACCACGTCATCGAGATGTCTGCCGTCACGCCGGACGCTGCAGGCTCGGGCGGCGTCCACCTCGACAAGTTCTTCGACGATGTGGAAGGCGTTAAAGAGGAGCTTCGCGAAGTCGAGCGTCTTCTCCAGAGTCTCCAGAGCAGCCACGAGCAGAGCAAGACGCTTCACAACGCCGCCGCCGTGCGTGACCTCCGGTCGAGAATGGACGCCGACGTATCGGCGGCGCTGAAGAAGGCGAAGGTGATCAAGCTCCGCCTCGAGGCGCTGGACCGGTCCAACGCTGCGAACCGGAACCTGCCGGGTTGCGGACCGGGTTCGTCATCGGACCGGACGAGAACTTCGGTGGTTAACGGTTTGAAGAAGAAGCTGAAGGATTCGATGGAGAGCTTCAATGAATTGCGGCAGCAGATCTCGGCGGAGTATAGGGAGACGGTGCAGCGGCGGTACTTCACCGTCACCGGCGAGAATCCCGATGAGAAGACGCTCGATCTCTTGATCTCTACTGGTGAGAGTGAGACATTCCTTCAGAAAGCCATTCAAGAACAAGGCAGGGGAAGAATTCTTGACACCATCAATGAAATTCAAGAAAGGCATGATGCTGTCAAAGAGATCGAGAAGAATCTCAAGGAGTTGCACCAGGTGTTCCTTGACATGGCAGTGCTGGTGCAAACACAGGGCGAGCAACTGGACGATATTGAGAGTCACGTGGCGCGAGCCCATTCGTTTGTGCACACCGGAACAGAGCGGTTGCAAACTGCAAGAAAGCACCAGAAGAACACCAGGAAATGGACCTGTTTTTGTATCATACTGCTTCTAGCGATTATCTTGGTAGTGTTGCTAGTGGTTCTGAAACCGTGGCAACATAATGGCAGCAGTGGTGGTGGTAGTCAGCCTGCTCCGGCTCAAACACCTCCACCACCACCTCCTGCCGGTGCTTAA 1002 0.5559 MNDLFSGSFSRLRNERTSPDRHHVIEMSAVTPDAAGSGGVHLDKFFDDVEGVKEELREVERLLQSLQSSHEQSKTLHNAAAVRDLRSRMDADVSAALKKAKVIKLRLEALDRSNAANRNLPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNELRQQISAEYRETVQRRYFTVTGENPDEKTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKNLKELHQVFLDMAVLVQTQGEQLDDIESHVARAHSFVHTGTERLQTARKHQKNTRKWTCFCIILLLAIILVVLLVVLKPWQHNGSSGGGSQPAPAQTPPPPPPAGA* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2850 333 MobiDBLite consensus disorder prediction 311 333 - -
Ahy12g2850 333 CDD SynN 42 199 IPR006011 GO:0016020
Ahy12g2850 333 Pfam Syntaxin 44 247 IPR006011 GO:0016020
Ahy12g2850 333 SMART tSNARE_6 207 274 IPR000727 -
Ahy12g2850 333 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 212 274 IPR000727 -
Ahy12g2850 333 Coils Coil 137 161 - -
Ahy12g2850 333 Pfam SNARE domain 248 300 IPR000727 -
Ahy12g2850 333 CDD SNARE_syntaxin1-like 211 273 - -
Ahy12g2850 333 SUPERFAMILY t-snare proteins 40 267 IPR010989 GO:0016020|GO:0016192
Ahy12g2850 333 Coils Coil 212 232 - -
Ahy12g2850 333 Gene3D - 209 305 - -
Ahy12g2850 333 Coils Coil 42 72 - -
Ahy12g2850 333 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 7 312 - -
Ahy12g2850 333 PANTHER SYNTAXIN 7 312 IPR045242 -
Ahy12g2850 333 SMART SynN_4 37 163 IPR006011 GO:0016020
Ahy12g2850 333 ProSitePatterns Syntaxin / epimorphin family signature. 218 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ahy12g2850 333 Gene3D - 40 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2850 Ahy-Chr12 118124625 118126835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2850 34 331 SNARE and Associated Proteins AT3G11820 73.616 1.40e-153 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2850 K08486 - gmx:100809258 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2850 12 118124625 118126835 Ahy2g2441 2 100505722 100508151 hybridization