Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2832 ATGACACTATCTTTAATTTCTTCTTCATATTCTTCTTCTACCACTAAATTTCAACTGTCATCAGCAGCAGCAGGTTCTTCATGGTGGAGTATTAGTGCCTTTGGATCTCATCAAAATCAATCATCAGTTTATGGAGACTCTTCTAATTATAATAATAATAATAATAACCAAATTATGAAACCATTTTCATTGGAGCTTCATAATAATAATAATTACATAGACCAACTTGCTTCTTCTTCCACTAATAAGCAACAACAATTCTTGGATAAAGGACCTACAACACAATTTACCATCTTTCCAGAAGATTGCAAAATTTCAGGGGAATCCCAAAAGTCTCAAGCCACATTATCTTTGCAGCCATCAAATGCTGACCCTAGGAACCGTTTTGAGCTTGGATTCACTCAGCCTATGATATGTGCAAAATATCCTTACATGGATCAATTTTATGGACTCTTCTCAGCTTATGCACCTCAAATTTCGGGGCGTATAATGCTGCCACTAAACTTGACATCAGATGATGGACCAACTTACGTGAATGCTAAGCAATACCATGGAATCATAAGGCGTAGGCAGTCACGTGCCAAAGCTGTTCTTGCCAATAAACTCATCAAACGTCGCAAGCCATATATGCATGAATCGCGCCATCTCCACGCGATGCGACGGCCAAGAGGATGTGGTGGCAGGTTTTTGAACACAAGAAACTCTGCCACCAACAATGGAAATGGTAAGAGTGGAAGTGAAGCAAACAAAAAAACACTTGGCCATCAACTACATTCTAGTGGTTCTCAGAGTTCTGAAGTCCTACAATCCTCGGCCGGAACCTTGAATTCGTTGAAGGAACCAAATGGAAGCAGTCCAAACATTTCATTAGAGGTGACAAGCATGTACTCATCAAGAGGAGGAATTGATGGATTTGCCATCAATCACATTGGAACTCCTATGCACTCCCTTGCAGATATGATGGACACTGGACATGGACATGGCATGATCATGCCCCCGAAATGGGTTTCAGCTGCGGCCGGAAACTGCTGCAACCTTAATGTTTGA 1047 0.4097 MTLSLISSSYSSSTTKFQLSSAAAGSSWWSISAFGSHQNQSSVYGDSSNYNNNNNNQIMKPFSLELHNNNNYIDQLASSSTNKQQQFLDKGPTTQFTIFPEDCKISGESQKSQATLSLQPSNADPRNRFELGFTQPMICAKYPYMDQFYGLFSAYAPQISGRIMLPLNLTSDDGPTYVNAKQYHGIIRRRQSRAKAVLANKLIKRRKPYMHESRHLHAMRRPRGCGGRFLNTRNSATNNGNGKSGSEANKKTLGHQLHSSGSQSSEVLQSSAGTLNSLKEPNGSSPNISLEVTSMYSSRGGIDGFAINHIGTPMHSLADMMDTGHGHGMIMPPKWVSAAAGNCCNLNV* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2832 348 MobiDBLite consensus disorder prediction 220 270 - -
Ahy12g2832 348 MobiDBLite consensus disorder prediction 230 270 - -
Ahy12g2832 348 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 18 347 - -
Ahy12g2832 348 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 175 229 IPR001289 GO:0003700|GO:0006355
Ahy12g2832 348 SMART cbf3 171 232 IPR001289 GO:0003700|GO:0006355
Ahy12g2832 348 PRINTS CCAAT-binding transcription factor subunit B signature 206 229 IPR001289 GO:0003700|GO:0006355
Ahy12g2832 348 PRINTS CCAAT-binding transcription factor subunit B signature 175 197 IPR001289 GO:0003700|GO:0006355
Ahy12g2832 348 ProSiteProfiles NF-YA/HAP2 family profile. 172 232 IPR001289 GO:0003700|GO:0006355
Ahy12g2832 348 Gene3D - 172 234 - -
Ahy12g2832 348 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 18 347 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2832 Ahy-Chr12 117937816 117943331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2832 129 346 CCAAT-HAP2 Transcription Factor Family AT3G05690 47.639 1.58e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Ahy12g2832 CBFB_NFYA 7.70E-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2832 K08064 - gmx:100527677 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2832 12 117937816 117943331 Ahy2g2425 2 100341598 100347034 hybridization