Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2830 ATGAGCAACCACAACACAACTAGTGATTCTTCTTCAGGATTCCTTGGATCCAATGACATAAGTGGATTTGGCTATGGCATTGGAATCTCAATTGGGATTCTTCTACTCATCACAACAATCACACTCACCTCATACTTTTGCACAAGAACACAAGTTCCAAACAATAACAACAGTAGGAGTAGGAGTAATCCTACTCCAGGTTCAAGGAGGAGCACCCAAGTATTCCTCGAACCGCAACACACGGTGGTCGATGTGGGACTAGATGAAGCAACAATTCTTGGGTACCCAAAGATGCTTTACTCAGAATCAAAGAAACTCAACAAGAAATCTGATGATTCAACATCAACATGTTGCTCAATTTGTCTTGGAGATTATAAGGGAAGTGATATGCTTAGAGTGTTACCAGATTGTGAACATGTTTTTCATCTGAAGTGCATAGATCCATGGTTGAGATTGCATCCAACTTGTCCTCTTTGCAGAACATCACCAATTCCAACACCACTTTCTACTCCTCTTGCTGAGGTTGTTCCATTAGCAACAAGAAGAGATTGA 552 0.4094 MSNHNTTSDSSSGFLGSNDISGFGYGIGISIGILLLITTITLTSYFCTRTQVPNNNNSRSRSNPTPGSRRSTQVFLEPQHTVVDVGLDEATILGYPKMLYSESKKLNKKSDDSTSTCCSICLGDYKGSDMLRVLPDCEHVFHLKCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2830 183 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 183 IPR045899 -
Ahy12g2830 183 SUPERFAMILY RING/U-box 117 165 - -
Ahy12g2830 183 MobiDBLite consensus disorder prediction 53 72 - -
Ahy12g2830 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 164 IPR013083 -
Ahy12g2830 183 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Ahy12g2830 183 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 1 183 - -
Ahy12g2830 183 CDD RING-H2_PA-TM-RING 117 160 - -
Ahy12g2830 183 Pfam Ring finger domain 118 160 IPR001841 -
Ahy12g2830 183 SMART ring_2 118 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2830 Ahy-Chr12 117920369 117921479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2830 10 181 C3H Transcription Factor Family AT5G06490 49.727 3.02e-57 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2830 - - gmx:100796149 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2830 12 117920369 117921479 Ahy2g2423 2 100328666 100329593 hybridization