Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2770 ATGGATATTTCTTCCCTCAGAGGGTTAACTGATCTGGAAATAATGGAAGATCCTACCTATCTTCATCAGTGGCATTTGAGCTCTATTGATGAGCCTACTTTACTTCCGATTGCTGCTGCTTTTGGAGAGACTTTACAGCAACATTCATTCTCTCATCCCAGTTTCAACCCCAAAACTTCCATGGAAACTTCACTTTCTAACATTGACAGACCTACAAAACATCTCAAGAACAATAGCTGGTGTCCAACTAAAACTCCATCCGAGGCACAATTTGCTTCTTGCTCAACTCTTCTTTCATTTGTGGATCCCAATTATATAAACCAGTTGGAAGTGGTGAAGTCTAAGGATGAGATGGTTTGTCCTAAAATGAATGACACAACTCCTAAAGACATGAACTTTCAAGGAACATTAGGAAATCAATATGTGTTCGAGGCTAGTCAGGCGACTAAGCATGTAGGGCCACGTTCTAGACTTTCTCAACCTCAAGACCACATAATAGCCGAAAGGAAGCGTCGAGAGAAGCTCAGCCAGCGGTTCATTGCTCTATCTGCCCTTGTTCCTGGACTACAGAAGACAGACAAAGCTTCTGTTCTTGGAGATGCTATCAAATACTTAAAGCAATTGCAAGAGAAGGTGAAGGCTCTTGAGGAAGAACAGAACAAGAGAAAAGCTGTGGAATCTGTAGTATTTGTGAAAAAATCTCAATTATCCAATGATGCAGAAGACGCTTCTTTAGAATATGAGGGTATCTTCCATGAGGCATTACCTGAAATTGAAGCAAGATTCTGTGATAAAAATGTTCTCATAAGAATCCACTGCGAGAAGAACAGAGGAGTTGTAGAAAAATCAATCAATCAAATTGAGAAACTCCATCTAAAAGTTACCAATAGCAGTGCCATGACGTTTGGGAGCTGGGCCTTAGATATAACTATTATTGCTCAGATGGAAAAGGGATTTTGCATGACAGTGAAGGAGCTTGTGAGAAACCTGCGCTCAGCTTTTGCATCTATCATTTGA 1017 0.4051 MDISSLRGLTDLEIMEDPTYLHQWHLSSIDEPTLLPIAAAFGETLQQHSFSHPSFNPKTSMETSLSNIDRPTKHLKNNSWCPTKTPSEAQFASCSTLLSFVDPNYINQLEVVKSKDEMVCPKMNDTTPKDMNFQGTLGNQYVFEASQATKHVGPRSRLSQPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASVLGDAIKYLKQLQEKVKALEEEQNKRKAVESVVFVKKSQLSNDAEDASLEYEGIFHEALPEIEARFCDKNVLIRIHCEKNRGVVEKSINQIEKLHLKVTNSSAMTFGSWALDITIIAQMEKGFCMTVKELVRNLRSAFASII* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2770 338 Coils Coil 198 228 - -
Ahy12g2770 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 222 IPR036638 GO:0046983
Ahy12g2770 338 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983
Ahy12g2770 338 CDD bHLH_AtNAI1_like 162 234 - -
Ahy12g2770 338 Gene3D - 157 232 IPR036638 GO:0046983
Ahy12g2770 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Ahy12g2770 338 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 2 337 - -
Ahy12g2770 338 SMART finulus 165 214 IPR011598 GO:0046983
Ahy12g2770 338 PANTHER BHLH TRANSCRIPTION FACTOR 2 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2770 Ahy-Chr12 117346119 117349567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2770 1 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.327 1.02e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy12g2770 HLH 3.40E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2770 - - aprc:113852973 434.106