Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2670 ATGATTTTTGCACTGATCCTTTTAGCTACACATCTCAATTATTTCATTGAAACCCCAAATTTCAAATCAACAACACAACAAGAAGGGAAAAAACATCTCCATTTCCAAAACCATATCCAATTAGTAGCACATTCAAAATGCAAAGGAACACTCTACCCTGATCTCTGTGTCTCAACCTTATCCACATTCCCAAACCTTGAAACAAGAACAATGCCACAAATAATCTCCAAAGTAGTCAACCACACAGTCCATGAAGTCAAATCTTCATCCAACAACTGCACCACCATAATCAAGAATCTCCAAAACACTCTCAACACAATTGAGAAAAGAGCCTTAGATGATTGTCTCAAACTCTTTGATGACACCATAGTAGAACTCAACACCACCATTCTTGATCTCTCAAAAAATCCATCATCATCATCATCATCATCTTCCAACCAAGATTTGCAAACTCTACTAAGTGGGGCAATGACAAATTTGTACACTTGTCTTGATGGTTTCTCACAAAGCAAAAATGGGAATGCTGTGAGAGGGTTGATAGAGGAGAAAGTGATTGAGATATCACATCATGTTAGTAACTCATTGGCAATGTTGAAGAAAGTGAAGACAAGTTTGAAGAAAGAAGAAGTGTCTGCTGAATATGGAACAATGAAGAAAGGGTTCCCTTCATGGGTTTCTGCTAAGGATAGGAAGCTTCTAGAAGGTGGAAATGTGAATGAAACTAAGATTGATGTTGTTGTGGCTAAAGATGGTTCTGGAAATTTTACTACTATTGGTGAAGCTGTAGCTGTGGCTCCTAATTCCACCACAACCAGATTCGACATGGACAACGACGGTAGCTTAACGATTCTAGAACTCGCCGCGCTCTTGCGTTTTCTAGGGATCAATCCCATGGGGAACCAGATCCACTTGTTGTGGACGAACATGGAGGTTAACGGCAATGGCTACGTCGAATTGGAAGCGGCGGTGGAGTCGGTGCCGAGACCGAAGACCATGCCGGACTTGACGTTTGATAACAGTAACACAGAAAGATTAATGGAAATCATGTCTGAAGAAGAAAAAAGGGAATTTGGATTTGATGTAAAGGCAATAGATTGGAAAGATTATATCACCAATGTTCATATACCAGGTCTAAGGAGACATGTCATGAAGGGAAGGGGAATGGGTAGTTAG 1173 0.4032 MIFALILLATHLNYFIETPNFKSTTQQEGKKHLHFQNHIQLVAHSKCKGTLYPDLCVSTLSTFPNLETRTMPQIISKVVNHTVHEVKSSSNNCTTIIKNLQNTLNTIEKRALDDCLKLFDDTIVELNTTILDLSKNPSSSSSSSSNQDLQTLLSGAMTNLYTCLDGFSQSKNGNAVRGLIEEKVIEISHHVSNSLAMLKKVKTSLKKEEVSAEYGTMKKGFPSWVSAKDRKLLEGGNVNETKIDVVVAKDGSGNFTTIGEAVAVAPNSTTTRFDMDNDGSLTILELAALLRFLGINPMGNQIHLLWTNMEVNGNGYVELEAAVESVPRPKTMPDLTFDNSNTERLMEIMSEEEKREFGFDVKAIDWKDYITNVHIPGLRRHVMKGRGMGS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2670 390 CDD FAR_C 336 383 IPR033640 -
Ahy12g2670 390 ProSitePatterns EF-hand calcium-binding domain. 274 286 IPR018247 -
Ahy12g2670 390 SMART PMEI_2 38 197 IPR006501 GO:0004857
Ahy12g2670 390 Pfam Plant invertase/pectin methylesterase inhibitor 45 197 IPR006501 GO:0004857
Ahy12g2670 390 PANTHER PECTINESTERASE 16 273 - -
Ahy12g2670 390 PANTHER PECTINESTERASE 16 273 - -
Ahy12g2670 390 CDD PMEI-like_3 47 200 - -
Ahy12g2670 390 TIGRFAM PME_inhib: pectinesterase inhibitor domain 42 200 IPR006501 GO:0004857
Ahy12g2670 390 ProSiteProfiles EF-hand calcium-binding domain profile. 273 296 IPR002048 GO:0005509
Ahy12g2670 390 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 200 IPR035513 -
Ahy12g2670 390 Gene3D - 268 372 - -
Ahy12g2670 390 SUPERFAMILY EF-hand 272 320 IPR011992 -
Ahy12g2670 390 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 202 IPR035513 -
Ahy12g2670 390 SUPERFAMILY Pectin lyase-like 242 272 IPR011050 -
Ahy12g2670 390 Pfam Male sterility protein 332 384 IPR033640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2670 Ahy-Chr12 116320671 116329659 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2670 73 273 Carbohydrate Esterase AT4G02320 40.187 5.73e-37 139