Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2598 ATGAGTGATAACATAGTCTCATCAACACAAACCTTTAATATTAAGTACAACAATACTATCACATTTTCTTCAACAAGTGGAATCTCTTCTTCTTCTTCTCATCATCATAATCATCAAGATGATGGTGGGGTTATCAAAGAGCAAGATCGGTTGCTTCCAATTGCAAATGTTGGGAGAATCATGAAGCAAATCCTTCCAACAAATGCAAAGATCTCAAAGGAAGCAAAGGAGACTATGCAAGAGTGTGTTTCTGAGTTCATAAGCTTTGTGACCGGTGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACCGTTAATGGTGATGATATTTGTTGGGCCTTGGCTACTCTAGGGTTTGATGATTATGCTGAGCCACTCAAAAGGTACTTGCATAAGTTTAGGGAATTGGAATGTGAAAAAGCTAATAATCAAAATAATATTAAGGTTATTAATACTACTAATAGAAATAATAATAATCTTATTGAAAAATATAGTAGTTATGGGGGTGATGATGATGAAGACTAG 528 0.3561 MSDNIVSSTQTFNIKYNNTITFSSTSGISSSSSHHHNHQDDGGVIKEQDRLLPIANVGRIMKQILPTNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHKFRELECEKANNQNNIKVINTTNRNNNNLIEKYSSYGGDDDED* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2598 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 29 160 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ahy12g2598 175 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 29 160 - -
Ahy12g2598 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Ahy12g2598 175 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ahy12g2598 175 SUPERFAMILY Histone-fold 48 157 IPR009072 GO:0046982
Ahy12g2598 175 Gene3D Histone, subunit A 43 167 IPR009072 GO:0046982
Ahy12g2598 175 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Ahy12g2598 175 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Ahy12g2598 175 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Ahy12g2598 175 Coils Coil 127 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2598 Ahy-Chr12 115454694 115455698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2598 29 144 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.228 7.00e-65 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ahy12g2598 CBFD_NFYB_HMF 1.90E-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2598 K08065 - mnt:21392404 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2598 12 115454694 115455698 Ahy12g2598 12 115454694 115455698 ECH
Ahy12g2598 12 115454694 115455698 Ahy2g2251 2 98637224 98638168 hybridization