Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2583 ATGTTGGGATCGGAGGAGATTGGTTCTGAATTCACGGCTGCAGTGATGGGGTTCTTCCAGACGCCCAGGTTACCGGCGGATGCCAATGTCAGTTGGGTGGCGCTGGCACCTAAATTCATAGGTGCGAAGGAGATTAAAGACTTGCGACCTATCAGTATGGTGGGGTGTGTGTATAAGGTTATTTTAAAGGTGTTGGTTAGGAGGATGAGATCAGTGATGCCAGCATTAGTAGGAGAGACCCAGAGTGCGTTTGTACAGGGAAGGAAAATCCATGATGGGGCGCTTATTGCATGTGAAACAGTTAACTGGCTTAAACTGAGGAAAAAAGAGGTTGCCCTAATCAAGCTTGACTTCCAAAAAGCATACGACAGGGTCAAGTGGAGCTTTGTGGTGCTGCAAAAGATGGCATTTGGTCATAAATGGAGAGCATGGGTTATGGAGTGTGTAGCTACTGCGTCTATGTCGGTGTTGATAAACGGCTCGCCGTCTAAACCGTTCAACATGGAAAAAGGCTTGAGACAAGATGACCAACTATCCCCGTTCTTGTTTGTACTGGTTGTGGATGTGCTGCATCGAATGATTGGAGAGGCAGTGAGGAACGGTCGTATATCACCGTTGCTGGTTGGTAGAGATAGTGTAGTATTGTCACACCTTCAGTTCGTTGATGACACTATCCTCTTTTGCCCACAAGAAGAGGAGACTATTAAGATTTACAAGAGGCTTCTGCAATACTTCGAGTTGATGTCAGGCCTGAGTATCAATTTTGATAAGTCCAGCCTGATCCCAATTAATTGTGAGGAGCAATGGGTCGAGCGTATGTGTAACTTGCTGGGTTGTAAGGGGGATGCCCTTCCAGTTAAATACCTTGGAATCTCTCTAGGAGCTAATCCGAGCTTGCCAGTATACTATTTAAACTTGTTCAAGATGCCGAAAGCTGTGGCCGAGAAATTGATTTCGCTGCAGAGACGATTTCTGTGGAGTTCAGAAGAAGGGAGGACTGGTATGGCATTAGTAAGGTGGGACGTGGTGCAGGCGCCGAAGAAACTAGGTGGGCTAGGAGTTGGGGATGCTATGGTTCGCAACACAGCGCTGTTGTTTAAGTGGTGGTGGCGATTTGCAAAGGAAGAATGCACACTATGGAAAAAGGTAGTATGTTCCTGTCATAATCTGAATCCCAATGAGCCACTGTCGACTCAAGAACTGCCTACTAGAGGGGGACCATGGAAGGATATCTGCCAGTTACAAATCATGAATCAACATTTAAGGGATAAGATGGTCGCAGGCCTATCCATGGAGGTGATGCAGGAGGAACTGATCCCAGAGGAGGTAACTAGCTACAGCTTCACCAGGACTGTTTGGAAGGGGTTGGTTCTGCCTAGAGTAGAGCTTTTTGTATGGTTTGCTCTGATAGGAAGAGTAAATACAAAGGACAGGTTGAGCCGGTTTGGAATCATCAGTCAGGAAGATGTTACTTGTGTTCTTTGTAACAACGAGGTGGAAGATGTATATCACTTGTTTCTAGGATGTGTATTTGCTTGTGTGGATGACTTTGATTGCTCCACTGTTATTGTGTTGAGCTGTTTGGTTTCCAAAAAAAAAAATGGTGGGCTTGAGGGAAGGCAGAAGATAGTATTTTCAATGAAAATACTACAGCAGAAATACCGTCGCAAAGATCCATTGTTGTGGACAAAAGATCTTATGCATCATTCTTCTGGTTCTTTCTCTTTCGCGGTTGCCACCAACGATAGAGAAGATCGTAGTGGCAATGGTGTCTATGATGGCCATGGTGGCCATGAAGCTTATTTCCTGGAGAACCGCCTTTTCAACGGACTAATGAAGAGGAGGAATTACCATGATGACATGACAGTTGTTGTCTTTATAGATTATGAAATGCTCGGCTGGCTGTAA 1908 0.4534 MLGSEEIGSEFTAAVMGFFQTPRLPADANVSWVALAPKFIGAKEIKDLRPISMVGCVYKVILKVLVRRMRSVMPALVGETQSAFVQGRKIHDGALIACETVNWLKLRKKEVALIKLDFQKAYDRVKWSFVVLQKMAFGHKWRAWVMECVATASMSVLINGSPSKPFNMEKGLRQDDQLSPFLFVLVVDVLHRMIGEAVRNGRISPLLVGRDSVVLSHLQFVDDTILFCPQEEETIKIYKRLLQYFELMSGLSINFDKSSLIPINCEEQWVERMCNLLGCKGDALPVKYLGISLGANPSLPVYYLNLFKMPKAVAEKLISLQRRFLWSSEEGRTGMALVRWDVVQAPKKLGGLGVGDAMVRNTALLFKWWWRFAKEECTLWKKVVCSCHNLNPNEPLSTQELPTRGGPWKDICQLQIMNQHLRDKMVAGLSMEVMQEELIPEEVTSYSFTRTVWKGLVLPRVELFVWFALIGRVNTKDRLSRFGIISQEDVTCVLCNNEVEDVYHLFLGCVFACVDDFDCSTVIVLSCLVSKKKNGGLEGRQKIVFSMKILQQKYRRKDPLLWTKDLMHHSSGSFSFAVATNDREDRSGNGVYDGHGGHEAYFLENRLFNGLMKRRNYHDDMTVVVFIDYEMLGWL* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2583 635 Pfam zinc-binding in reverse transcriptase 445 512 IPR026960 -
Ahy12g2583 635 CDD RT_nLTR_like 37 291 - -
Ahy12g2583 635 PANTHER OS01G0885550 PROTEIN 17 514 - -
Ahy12g2583 635 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 17 293 IPR000477 -
Ahy12g2583 635 SUPERFAMILY DNA/RNA polymerases 40 265 IPR043502 -
Ahy12g2583 635 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 45 292 IPR000477 -
Ahy12g2583 635 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 17 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2583 Ahy-Chr12 115227154 115234697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2583 560 613 PP2C-type Phosphatase Gene Family AT5G06750 45.455 2.81e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2583 - - ahf:114924936 1294.26