Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2572 ATGTCGTTTAGGAGTATAATCTTTGATATGAAGGGTTTGAGATCCAGGTCACAATCACACCACAGAGATGGTGTTGGTGGTGTTGTTAGTGTTAGTGAGGGTGGTGGTTTGGTGGTTCTTGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCACCTGAGCTATTGAGGGATGTGCTCTTGAGGATTGAGGCCTCTGAAGATGCCTGGCCTGCCCGGAAACATGTCGTTGCCTGTGCCGGTGTATGCCGCAGCTGGAGGGAGATCATGAAGGAAATTGTCAAGTCCCCTCAAGTTTCCAGCAAGCTCACATTCCCAATCTCATTGAAGCAGCCTGGTCCAAGAGATTCTCTTCTCCAGTGTTATATTAAACGCAATCGTAGTAATCAAACATATTATCTGTACCTTGGTTTAAATCAAGCCTCAACTGATGATGGAAAGTTCCTTCTTGCTGCACGCAAATGTCGTCGTGCAACTCACACCGACTATATCATCTCTCTTAACTGCGACGACGTATCAAGAGGGAGTAGCACCTATATTGGAAAACTCAGATCAAACTTTCTGGGGACTAAGTTCACCATATATGATGCGCACCCTCCACTTTGTGGAGCTGCCAAAGTTACAAAGTCTCGTTCCACCAGGCTGGTTAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCCGGCAACTATCCCATTGCACATGTTTCGTATGATCTGAATGTTTTGGGATCCAGCAGGGGCCCTAGGATAATGCAATGTGTTATGGATGCCATCCCCGCATCGGCTGTTGAACCAGGAGGTGTAGCTCCAACACAGACTCATTTTCTTCATAGCCGAATTGAAACTTCTCCATCTATTCCCTTTTTTAGATCAAAATCAACCCGTGTCGACAATCTCCAACTGGTTCCTTCGACTACTCAAAACGAGGGAATGCTTGTGTTACGAAACAAGTCCCCTAGGTGGCATGAACAACTCCAGTGCTGGTGTTTGAACTTCAATGGACGAGTGACAGTAGCCTCGGTTAAAAACTTTCAGCTGGTTGCATCACCAAAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGAAAAGATGTATTCACCATGGATTATCAGTATCCAATCTCTGCCTTCGAAGCATTTGCAATTTGCCTTAGTAGCTTTGACACCAAGATTGCTTGTGAATGA 1209 0.4533 MSFRSIIFDMKGLRSRSQSHHRDGVGGVVSVSEGGGLVVLDGLKQSCWANMPPELLRDVLLRIEASEDAWPARKHVVACAGVCRSWREIMKEIVKSPQVSSKLTFPISLKQPGPRDSLLQCYIKRNRSNQTYYLYLGLNQASTDDGKFLLAARKCRRATHTDYIISLNCDDVSRGSSTYIGKLRSNFLGTKFTIYDAHPPLCGAAKVTKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSSRGPRIMQCVMDAIPASAVEPGGVAPTQTHFLHSRIETSPSIPFFRSKSTRVDNLQLVPSTTQNEGMLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2572 402 Pfam Tub family 109 397 IPR000007 -
Ahy12g2572 402 Gene3D Tubby Protein; Chain A 105 402 IPR025659 -
Ahy12g2572 402 SUPERFAMILY F-box domain 42 91 IPR036047 GO:0005515
Ahy12g2572 402 Pfam F-box domain 48 94 IPR001810 GO:0005515
Ahy12g2572 402 SUPERFAMILY Tubby C-terminal domain-like 97 402 IPR025659 -
Ahy12g2572 402 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 1 401 - -
Ahy12g2572 402 ProSitePatterns Tub family signature 2. 387 402 IPR018066 -
Ahy12g2572 402 PRINTS Tubby superfamily signature 332 348 IPR000007 -
Ahy12g2572 402 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Ahy12g2572 402 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Ahy12g2572 402 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Ahy12g2572 402 PRINTS Tubby superfamily signature 359 378 IPR000007 -
Ahy12g2572 402 PRINTS Tubby superfamily signature 380 402 IPR000007 -
Ahy12g2572 402 PRINTS Tubby superfamily signature 314 331 IPR000007 -
Ahy12g2572 402 PANTHER TUBBY-RELATED 1 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2572 Ahy-Chr12 115056515 115060525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2572 1 402 TUB Transcription Factor Family AT2G47900 72.993 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Ahy12g2572 Tub 3.30E-107 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2572 12 115056515 115060525 Ahy12g2572 12 115056515 115060525 ECH