Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2548 ATGGATAAAGCGGTTGATTCCAGTGGTGAGAATAAGCAGGATCAAGGGTGTAAGAACAAGCGAAAATCGGTTGATCCTTCCGTAGCTGTTACCAGTGCCCCCACATCTTTGATTGAGTTCCCTCGGTATGAATTATCGTCGGAGCTTCCACAAAACTTAAATGGTACTAATCCATCTGAGGTAGTATCAGATTGGTATAGAGTAGAATCAGAAATGCGTATGAACGAGCTTGTGGATTGGAATGATCCTATTGCAAACCAGCTTGAGGAATTACTGTTGTCTAATTTGCAAGCTGTTTTTCATGCTGCAATCAAGCAGATTGTTGAATTAGGATATGGTGAAGAGGTGGCTCACATGTCCATTTCAAGGAGAGCCTTGTACATAGAGGAAGGAGACCCTGTCTCAAATATTGTACAAGATACAGTGAATATTCTTAAGGGAAAAGATATTGCTGGTTCGGATGTCGTGTTTGAAAATTTTCAGCATTTACTGTACTACACCATGTTGGAGATGATCAGTGTACTTCGCGAAGTTAGACCGTCCTTAACAGCTGGCGAAGCAATGTGGCTTTTGTTGATGTGCGACTTGAACATCTCACTAGCCTGTTCAGCAGAAGATCGCCCGAGTGGTGTTGTTCAGAATGGGGAAAGCTCTTCTGGTTCTTCTGTTCCCCAGTCAAAGCCAGAGGTTCAAATCTCTGAATCTGACATAATTATTGAGCCAACTGTCCCAAAGGAATTGCCCCATAGTCACCAGAACAAGTCTGAAGCACCTAAGTTCGGAAGTTTCCAGAATGCCCCGAACAGTCAAAGTCTTCTTGTTTCAGAAGGGGGAAAGCTTCATAAGGGGAATGCTTCTTTGCTGGTCACTACAGAGAAATCCACAGGAACTTCAGTGGGTCCTGCTAAGGAATCTAAATCCGGGTCTAGTTCCAAGCGCCATAACAGAAAAGAAATAGTAGCACTTAGGCAGAAGTTCCTTCATATGGAGAAAGCTTACAGGGCTTGTGGAAAAGGTGGTTTTAAATCAGGGAAACTTACAAGTGTAAGTAGTTTGGTTGTTGAAAAAAGAATCAAGCAACCATCTGAAATTCCTAATCAGCAAATGAAGTGTGGTTCCTCAAATTCAACAAGCACAAAAGGAGTTCACTCAGCTGATGCAGCATGCTGTGTTTCGACCAATAGTTCCTCTACTTCAAATGGAAGAGGTAACACCGGAACATTACCTACAAAAGATGCAACATCTGCTTCTACTGTAGTCAATTCTACTACAGTGTCGGACACTACATCCAAGCCTAAGTCTGAACCTAGTTCCACTGACAATCAAAAGATTCTTGATTTCTGTGCCGGCATTCCTTATGATGAGTCTTTGGGTAAGTATGTGCCAAGAGATGAGAAGGATGAACTAACTTTGATGTTAATAGCTCGCGTGCAAGAATTGCAGTTTGGGATGCAAAGCTGGAACAACTGGACAAAACAAAAAGTTATGCAAGTTACTGAGAGGCTCGGAAAAGTGCAGAGTGAGCTTAAAGCTCTTAGGAAGGAGAAGCAAGAAGCCGACCTATATAAAAAAGATCAGAAACTTTTGGAGGAGAATGCAGTGAAGAGAATCTCTGAGATGGAGAATGCTATGGAGAATACTAGAAAGCAAATTGAGAATGCTACTTCTGCTGCAGTTGAGCTAGAGGCAGAGAACGCTTCGCTGAAGAAGGAATTGGATGATGCTAAGTTGTGGGTTCTAAAGTCGATGACAAGCCATCGACAAGCACTTGAGAGAGAGCAGATTGTTCTTAAACAGCTTCAATCATGGGAGAGCCAAAATGGTTTGCTTCGAGATGAGCTTGAGGGAGAGAAGCACAGTTTATCTAACCTACTACAAGTGCTACACAAGGAGAAAAATCTTCTAGCCAACATTGAGGGTAGACTGGAACAAGAGAGAGCTGTGAAAGAAAAGCTCCTTGCACAGGCAGCATCCATTAGAAAGGAAAGACAACAACTCGAAGCGCACATCAAATCTGAAGAGGATACTATTAGAAAAAGGGCAGCTAATGATATGCAGAAATATGTGGATGATATTGCAAGGCTTGAGAAAGAGTTGATTGAGTTAAAAATAAAATCCGAGTCTGAACAAATAGCAGCTCTTCGCAGGGGTGTTGATGGTAAAAATGACAAGTTCTCCAGAACCAGCAAGAATACTCCTACGGTGAAGGAGAACAAGAAATCTAATGCGTCCCAAACGATGGTTAGCAATCGAGATAAAATGTCTACCGGAAGCTTGAGGCGAGAGCAGGAGTGTGTCATGTGCCTATCAGACGAGATGTCAGTGGTTTTTCTGCCTTGCGCGCACCAGGTTGTTTGTCAAGACTGCAACGAACTCCACGAGAAGCAAGGGATGAAGGATTGCCCTTCATGTAGGACCCCAATCCAACGGAGGATTCATGCAAGATTTGCCGGACATTCGAGGGTGTAG 2469 0.4305 MDKAVDSSGENKQDQGCKNKRKSVDPSVAVTSAPTSLIEFPRYELSSELPQNLNGTNPSEVVSDWYRVESEMRMNELVDWNDPIANQLEELLLSNLQAVFHAAIKQIVELGYGEEVAHMSISRRALYIEEGDPVSNIVQDTVNILKGKDIAGSDVVFENFQHLLYYTMLEMISVLREVRPSLTAGEAMWLLLMCDLNISLACSAEDRPSGVVQNGESSSGSSVPQSKPEVQISESDIIIEPTVPKELPHSHQNKSEAPKFGSFQNAPNSQSLLVSEGGKLHKGNASLLVTTEKSTGTSVGPAKESKSGSSSKRHNRKEIVALRQKFLHMEKAYRACGKGGFKSGKLTSVSSLVVEKRIKQPSEIPNQQMKCGSSNSTSTKGVHSADAACCVSTNSSSTSNGRGNTGTLPTKDATSASTVVNSTTVSDTTSKPKSEPSSTDNQKILDFCAGIPYDESLGKYVPRDEKDELTLMLIARVQELQFGMQSWNNWTKQKVMQVTERLGKVQSELKALRKEKQEADLYKKDQKLLEENAVKRISEMENAMENTRKQIENATSAAVELEAENASLKKELDDAKLWVLKSMTSHRQALEREQIVLKQLQSWESQNGLLRDELEGEKHSLSNLLQVLHKEKNLLANIEGRLEQERAVKEKLLAQAASIRKERQQLEAHIKSEEDTIRKRAANDMQKYVDDIARLEKELIELKIKSESEQIAALRRGVDGKNDKFSRTSKNTPTVKENKKSNASQTMVSNRDKMSTGSLRREQECVMCLSDEMSVVFLPCAHQVVCQDCNELHEKQGMKDCPSCRTPIQRRIHARFAGHSRV* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2548 822 ProSiteProfiles Zinc finger RING-type profile. 765 805 IPR001841 -
Ahy12g2548 822 MobiDBLite consensus disorder prediction 289 317 - -
Ahy12g2548 822 Coils Coil 678 712 - -
Ahy12g2548 822 Coils Coil 495 578 - -
Ahy12g2548 822 MobiDBLite consensus disorder prediction 393 441 - -
Ahy12g2548 822 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RF298-RELATED 4 817 - -
Ahy12g2548 822 MobiDBLite consensus disorder prediction 721 755 - -
Ahy12g2548 822 MobiDBLite consensus disorder prediction 289 306 - -
Ahy12g2548 822 Coils Coil 611 676 - -
Ahy12g2548 822 MobiDBLite consensus disorder prediction 727 754 - -
Ahy12g2548 822 MobiDBLite consensus disorder prediction 209 268 - -
Ahy12g2548 822 MobiDBLite consensus disorder prediction 1 21 - -
Ahy12g2548 822 PANTHER OS05G0141500 PROTEIN 4 817 IPR046934 -
Ahy12g2548 822 SUPERFAMILY RING/U-box 759 811 - -
Ahy12g2548 822 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 737 815 IPR013083 -
Ahy12g2548 822 MobiDBLite consensus disorder prediction 210 232 - -
Ahy12g2548 822 Pfam Family of unknown function (DUF6592) 95 204 IPR046527 -
Ahy12g2548 822 Pfam Zinc finger, C3HC4 type (RING finger) 762 810 - -
Ahy12g2548 822 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2548 Ahy-Chr12 114615793 114620340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2548 765 812 C3H Transcription Factor Family AT1G73950 41.667 8.78e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2548 - - gmx:100793172 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2548 12 114615793 114620340 Ahy2g2209 2 97963779 97968363 hybridization