Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2523 ATGGATTATGGTAATAAGTACACTATTCCAACACCTGGAATCAAAGTGTTGGTGGTGGATTGTGATTCAACATCTCTAACATTGGCATCTAAAATGCTTCGTATCCTTGGATATGAAGTTGTGACTGCTAAACTAGGTTCTGATGCTTTATCAATTATTGAGAAGAATGAGCTTCACCTTGTGCTCATGGAGATTCATTTGCCTGACATGAAAATGTTTGAACTCATTGACAAAATCAGAGAAAGCTATGACATCCCATCTTTCATTATGAGTGCTGATGAAAATCAAACTTCAAAGTCAAAAGCACTAAGCAAAGGAGCTAAACTCTATTTCATAAAGCCACTTCTACTTTCTGATTTAAAGGGCCTCTGGAAATTTGCATCATGCAACACAAAAGTTTCAACAGTAACCACTGATCAAAATGGATCAAAGAGTATCATAGTGAACAAGGATCAAGAATGCAAACCACTGAATAATAATAACAATAATAATAACAAAGAGAAAAAACAAGAACTTGTTGAATCATCAGTGGTCCAGAGAAGGAAAAGGATTAGGTGGACTGATCATTTGCATATGAAGTTCATGGAAGCTGTTATATTAGCAGGATCTGGTGCTGGTCCTAAGAAAATACATGAGTATATGAATGTGCCAGGAGTCACAAAAGAGCATGTTTCAAGCTATTTACAGAAATATCGCCAATCTTTGAAAGCGCAAGATAGTGAAATTCAATATCAAAGGAAAATTCTATCATCCGAGTCAAATTTAGGATCATACCAATCGAAGGATCTCTTCCATTGCAAGTCAGAGCAATTTCTTGATGCTCCTGCACATCTTCCTTCCACAGAAATTCCAACTGTTCATGAACCAGCTTTGAGCCAAAACCAATTACTCCCAGGGACACTGGTGCAAGGTGAGATGAATGGCAATGGTGTGGAATCTGTGATTAGCCAAGAAGAAAGTTATACTGATGGAAGAGTTTCTGAAGAAGATCAATTAGACCCAACTGAAGATTTTGAAACAATGATGACAAATACTGGGTCTTGTTTCACTAGCTGGAGTCGGCTACTTGATCCTGAAGAAACCTCTTACGAGGTTTCCTCTAAGGATTATACTGCTGAAAACAGTGATTTGAATCGTTCGATGTCGATGGAGAATGACATGTGTCAACAGTTTCCTGCATTTCCTTCAGTACCATCAGGAAATGTTGATGAGATCTTCAATATTTCAAAGGAAACTGAGAATGCCTGTGATGAGGATTTAGATAGTTGGCTAAAAAGCTTATAG 1284 0.3754 MDYGNKYTIPTPGIKVLVVDCDSTSLTLASKMLRILGYEVVTAKLGSDALSIIEKNELHLVLMEIHLPDMKMFELIDKIRESYDIPSFIMSADENQTSKSKALSKGAKLYFIKPLLLSDLKGLWKFASCNTKVSTVTTDQNGSKSIIVNKDQECKPLNNNNNNNNKEKKQELVESSVVQRRKRIRWTDHLHMKFMEAVILAGSGAGPKKIHEYMNVPGVTKEHVSSYLQKYRQSLKAQDSEIQYQRKILSSESNLGSYQSKDLFHCKSEQFLDAPAHLPSTEIPTVHEPALSQNQLLPGTLVQGEMNGNGVESVISQEESYTDGRVSEEDQLDPTEDFETMMTNTGSCFTSWSRLLDPEETSYEVSSKDYTAENSDLNRSMSMENDMCQQFPAFPSVPSGNVDEIFNISKETENACDEDLDSWLKSL* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2523 427 SUPERFAMILY Homeodomain-like 179 236 IPR009057 -
Ahy12g2523 427 SUPERFAMILY CheY-like 12 127 IPR011006 -
Ahy12g2523 427 SMART REC_2 14 124 IPR001789 GO:0000160
Ahy12g2523 427 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 355 IPR045279 GO:0009736
Ahy12g2523 427 Gene3D - 177 237 - -
Ahy12g2523 427 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR8-RELATED 13 355 - -
Ahy12g2523 427 Gene3D - 8 132 - -
Ahy12g2523 427 MobiDBLite consensus disorder prediction 155 174 - -
Ahy12g2523 427 Pfam Response regulator receiver domain 16 120 IPR001789 GO:0000160
Ahy12g2523 427 ProSiteProfiles Response regulatory domain profile. 15 128 IPR001789 GO:0000160
Ahy12g2523 427 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 182 233 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2523 Ahy-Chr12 114171913 114175582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2523 13 267 Response Regulator Gene Family AT2G25180 31.136 1.80e-30 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ahy12g2523 Response_reg 1.70E-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2523 - - ahf:112728429 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2523 12 114171913 114175582 Ahy2g2186 2 97603420 97607082 hybridization