Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2521 ATGGGGAGTTCAGGTACGAACTTGGTGACTACAATAATTGGTTTTGGATTGAGTGCAACATTCATAGTGTTTGTGTGCACAAGAATCATTTGTGGGAGAATTCAAAGGTATATAGCATCATCATCATCTTCATCATCAAGGACTATATATGAATTTCAATCAAGACCAGACATAGAACGGGGAGAACATGATGTTGTTGAGGGAGTACCTGCTTTTGTTTCTGCAATCCCCACTTTAAAGTTCAACAAAGAGGCTTTCAGCTCCGTTGAATGTACACAGTGTGTGATATGTTTGGGAGATTACAAAGAGCAAGAATTGTTGAGGATCATACCAAAATGTGGGCACTGTTTTCATGTCTCTTGCATTGATATGTGGCTAAGAAAGCAATCTACATGCCCTGTATGCCGTTTGCCACTTAGAAATGCTCTTGAACAAAAGAATGTGACAAGTGTGGCATTCACAATAAGCCACCACCACTCTCTTCATGATGAGTCTAATGCTTCATTACAAAGGAACATTAGTGATGATGAGAGGCCAGTAGTTGATTCTAATTCTAGTAACACCTCACTTCCAATTTCTGTAGGAGAACCTGAAATAAGACCCTGA 606 0.396 MGSSGTNLVTTIIGFGLSATFIVFVCTRIICGRIQRYIASSSSSSSRTIYEFQSRPDIERGEHDVVEGVPAFVSAIPTLKFNKEAFSSVECTQCVICLGDYKEQELLRIIPKCGHCFHVSCIDMWLRKQSTCPVCRLPLRNALEQKNVTSVAFTISHHHSLHDESNASLQRNISDDERPVVDSNSSNTSLPISVGEPEIRP* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2521 201 MobiDBLite consensus disorder prediction 179 193 - -
Ahy12g2521 201 Pfam Ring finger domain 93 136 IPR001841 -
Ahy12g2521 201 CDD RING-H2_EL5_like 93 136 - -
Ahy12g2521 201 PANTHER OS11G0150450 PROTEIN 1 177 - -
Ahy12g2521 201 SUPERFAMILY RING/U-box 93 146 - -
Ahy12g2521 201 MobiDBLite consensus disorder prediction 177 201 - -
Ahy12g2521 201 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Ahy12g2521 201 PANTHER OS02G0676500 PROTEIN 1 177 - -
Ahy12g2521 201 SMART ring_2 94 135 IPR001841 -
Ahy12g2521 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 146 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2521 Ahy-Chr12 114162026 114163877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2521 83 139 C3H Transcription Factor Family AT4G10160 56.140 2.55e-18 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2521 - - adu:107475875 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2521 12 114162026 114163877 Ahy12g2521 12 114162026 114163877 ECH
Ahy12g2521 12 114162026 114163877 Ahy2g2184 2 97594969 97596978 hybridization
Ahy14g2357 14 126071447 126073625 Ahy12g2521 12 114162026 114163877 PCT
Ahy4g2076 4 114501856 114504059 Ahy12g2521 12 114162026 114163877 PCT
Ahy12g2521 12 114162026 114163877 Ahy14g2357 14 126071447 126073625 PCT
Ahy12g2521 12 114162026 114163877 Ahy4g2076 4 114501856 114504059 PCT