Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2518 ATGGTGGAAGATTATGGTGCTGCTGCTGCATCATTTGATGCTAGTTCAACAGAAGAATGGTTGCTTCATGCACAAAAGCTTGTTCCTGCAGCAATGTCTAAAGCAAAAGAGGTTAAAGTTTTCCCAGTCAAGTGGAAGATGATTATCTCGAAATTGGAGCAGATTCCGTCGCGTTTATCGGACTTGTCGAGCCACCCTTGCTTCTCCAAGAATGCTCTCTGCAAGGAGCAATTGCAGTCAGTTTCCAAGTCACTCGAAGAAGCTATCGAATTGGCCGAGCTTTGTTTGAAGGAGAAGTATGAAGGTAAGCTTCGGATGCAGAGTGATCTCGACGCTTTAGCTGGGAAACTCGATTTAAATTTGAAAGATTGCAGCTTGCTCATCAAAACCGGTGTGCTAGGAGAGGCTACTCTGCCTTTGATGGTGTCTGGTTCTGTTCAAGACTCTGATGTAGATTTTGCATCCATTAAGGAATTACTTGCAAGGCTTCAGATAGGTAACTTGGAAGCCAAGCAAAGAGCATTGGAGAAGCTCTATGATGTGATGAAAGAAGATGAGAAGAATGTTTTGGCTGTTCTTGGGAGAAGCAATGTTGCTGCATTGGTTCAATTGCTTACAGCAACATCTCCAAGGATTAGGGAAAAGGCTGCTACTGTGATATGTATTCTTGTGGAATCTGGTAGTTGCGAAAATTGGCTAGTTTCTGAAGGAGTTCTGCCACCCCTAATTCGGCTCGTTGAATCCGGTAGTGCTGCAGGGAAAGAGAAGGCCACGGTTTCTCTTCAGAGGCTGTCAATGTCGGCCGAAACCACCCGTGCAATTGTTGGACACGGTGCTGTTCGGCCGTTAATTGAGGTTTGCCAAACAGGGGACTCTGTTTCTCAGGCTGCAGCCGCTTGTGCTTTGAAGAATGCGTCGTCCGTGCCGGATGTGAGGCAGGTTTTGGCTGAAGAAGGCATTGTGAAAGTGATGATTGAGCTCCTTAGCTCTGGAATTTTGTTGGGAACGAAAGAGTATGCGGCCGAGTGCTTGCAGAATCTAACAGCGAGCAACGAGAATCTAAGAAGATCTGTCATAGCAGAAGGTGGTTTCAGCAATCTCCTGGCCTATCTTGATGGCCCTCTTCCTCAAGAATCCGCGGTCGCAGCCCTGAGGAATTTGGTTGGTTCTGTTTCTGAGGATGTTCTGGATTCCCTCGGCTTGCTTCCTCGATTGGTTCACGTGCTTAAGTCGGGTTCCTTGGGAGCCAAGCAAGCTGCAGCCTCTGTCATTTGCCGGATTTGTGGCCCGGTTGAGATGAAAAAAATGATCGGCGAAGCCGGCTGCATACCTCTTCTGATAAATTTGCTTGAGGCTAAAGCAAATAGTGCTAGAGAAGCTGCATCACAAGCAATTTCGAGCTTGATGGTTCTGTCTGCGAATCGAAGAGAGGTTAAGAAGGATGATAAGATTGTGGTGCCAAGTTTGGTTCAGTTGCTTGATCCAAATCCACAGAACACTGCAAAGAAATATGCAGTTTCATGCCTTGCATCATTGTCTTCTTGCAAGAAATGTAAGAAGCTTATGATTTCTTATGGAGCAATAGGGTATCTCAAGAAGCTTAGTGAGATGGAGATTCCTGGATCTAAGAAGCTTCTAGAGAGATTGGAAAGAGGAAAACTCAGAAGCTTGTTTAGCAGAAAATAA 1686 0.4573 MVEDYGAAAASFDASSTEEWLLHAQKLVPAAMSKAKEVKVFPVKWKMIISKLEQIPSRLSDLSSHPCFSKNALCKEQLQSVSKSLEEAIELAELCLKEKYEGKLRMQSDLDALAGKLDLNLKDCSLLIKTGVLGEATLPLMVSGSVQDSDVDFASIKELLARLQIGNLEAKQRALEKLYDVMKEDEKNVLAVLGRSNVAALVQLLTATSPRIREKAATVICILVESGSCENWLVSEGVLPPLIRLVESGSAAGKEKATVSLQRLSMSAETTRAIVGHGAVRPLIEVCQTGDSVSQAAAACALKNASSVPDVRQVLAEEGIVKVMIELLSSGILLGTKEYAAECLQNLTASNENLRRSVIAEGGFSNLLAYLDGPLPQESAVAALRNLVGSVSEDVLDSLGLLPRLVHVLKSGSLGAKQAAASVICRICGPVEMKKMIGEAGCIPLLINLLEAKANSAREAASQAISSLMVLSANRREVKKDDKIVVPSLVQLLDPNPQNTAKKYAVSCLASLSSCKKCKKLMISYGAIGYLKKLSEMEIPGSKKLLERLERGKLRSLFSRK* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2518 561 Gene3D - 393 538 IPR011989 -
Ahy12g2518 561 Gene3D - 153 392 IPR011989 -
Ahy12g2518 561 Coils Coil 165 188 - -
Ahy12g2518 561 SMART arm_5 308 349 IPR000225 GO:0005515
Ahy12g2518 561 SMART arm_5 471 514 IPR000225 GO:0005515
Ahy12g2518 561 SMART arm_5 185 225 IPR000225 GO:0005515
Ahy12g2518 561 SMART arm_5 430 470 IPR000225 GO:0005515
Ahy12g2518 561 SMART arm_5 350 389 IPR000225 GO:0005515
Ahy12g2518 561 SMART arm_5 392 429 IPR000225 GO:0005515
Ahy12g2518 561 SMART arm_5 267 307 IPR000225 GO:0005515
Ahy12g2518 561 Pfam Armadillo/beta-catenin-like repeat 432 468 IPR000225 GO:0005515
Ahy12g2518 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 319 363 IPR000225 GO:0005515
Ahy12g2518 561 SUPERFAMILY ARM repeat 156 538 IPR016024 -
Ahy12g2518 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 561 - -
Ahy12g2518 561 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2518 Ahy-Chr12 114115756 114119748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2518 206 479 U-box Gene Family AT3G54790 29.391 9.09e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2518 - - gmx:100809488 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2518 12 114115756 114119748 Ahy12g2518 12 114115756 114119748 ECH
Ahy12g2518 12 114115756 114119748 Ahy2g2181 2 97567236 97571225 hybridization
Ahy14g2353 14 125949817 125953881 Ahy12g2518 12 114115756 114119748 PCT
Ahy4g2073 4 114358243 114363840 Ahy12g2518 12 114115756 114119748 PCT
Ahy12g2518 12 114115756 114119748 Ahy14g2353 14 125949817 125953881 PCT
Ahy12g2518 12 114115756 114119748 Ahy4g2073 4 114358243 114363840 PCT