LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy12g2405	ATGACTTCTTCTTCTTCTTCTTCTTCTTCTTCATCCACTGCTCCTCAATTCAAATATGACGTCTTCATAAGTTTTAGAGGTTCAGACACTCGCTGTGGCTTTTTCAGCCATTTGCTTACAGCATTACGTCAGAAAAAGATTCATGTATATGTAGATTATAACCTTAAAGAAGGAAATGAAATATTACCAGCACTTTTCGCAGCAATTGAACAATCACAAATTGCATTAGTTATTTTCTCGAAAGACTATGCCTCTTCGAAATGGTGCTTAGAAGAGCTTGTCAAAATAACTGAATGCCAAAAAGAGAAGGGTCAAATCATCATACCTATTTTCTACAATGTAGAGCCTTCAGAAGTGCGACATCAGAAGAGGTCCTATGCAGAAGCATTTGTTAAACATGAAAACATGAAAATGATTTCAAGGACAAAGTCAATAAATGGAGAGCTGCACTGCAGAAGTGAGGAAGAAGTTGTCAAACACATTTTGAAAACTTTAGATGATATGCACCCAGCTTATGACTTTCAAGGCCTTGTTGGAATTAATAAACCAGTCGACGAACTTGAGTCAATAGTTTTTGCCAATGGCTCAAAAGATATTCGTGTTATAGGAATTTGGGGCATGGGTGGCATTGGTAAGACTACTATTGCCACTGTATTATTTAACAAATTGTGTTCTCAATATGAAAGTCGTCATTTCCTAGCAAATGTCAGAAAGGAGTCAGAGAAGTGGGGAATAATTCAATTAAGAGACAAAATTCTTTCTGTATTCACAGACGAAAAAGATTTAAACATTGGTGTTCCCAACGGAGTACCGAAACATGTTTTGAGAAAACTTCGTCGCAGAAAGATTCTTGTTGTTCTTGACGATGTTAGTACTTCTGATCAAATCACAAACTTAGTTGGAGGACATAATTGGTTGGGTCCTGGTAGTAGAATCATTGTTACAACTAGGGATAAACATGCAATTTGTAAAGAAGCAGATGACATATACAAAGTAAAGGCATTGGAATCTAGTGATGCCCGACAGCTGCTAAGTTTGCATGCCTTTGATGGAACTGATGGGCATTGCCTTGAATTGCACTGGCATAATCTTGTGTCGAAAATGGTTGAATATGCTAAAGGCATCCCATTAGGATTGAAAGTTTTGGGTTCTTTTCTTTATGGCAAATGCTTTGAAGAATGGGAATGTCAATTCCAGAAGCTTCAGAAAATGCCCTTTCCAGAGATTCATAATGTGTTGAGATTAAGTTATGAAGGATTGGATCACCAAGAGAAGAGCATATTTTTATATGTTGCTTGTTTCTTCAAAGAGGATGAAGGAAAGGATACTGTAGAGAATTTATTAGATGCTTGTGGTTACTCAACATCTATTGCATTAAAAACTCTCCAAGATAGAGCTCTTATAAGTATTCAACATTGTGTATCCATGCATGACTTGATTCGAGAAATGGGCCGATGGATTGTGCGTCAACAAAGCATCAATAAGCCTGGAGAACAACGTCATTTATGGGATCCTCATGACATTCATCGTGTATTGAAACATAGAGAGGGCACGGACCATATTGAAAGCTTAACCTGGAACATGTCAAGTGTTAGTGCTGACATAAGCCTAAGTCCTCATTTGTTTGCTAGAATGGAAAATCTAAAACTTCTGAGGTTTTATTTCAATAATAATAATAATAATAGCAGTGATTATTACTATTATTATTATTATTGTTCGGATAATAACACATGCCAAGTGCATCTTCCAGAAGGTCTTGAAATACTGCCACAGAAACTACGACTCTTTCATTGGGACAATTACCCTGCGAAATCCTTTCCAACAACATTCAATGCAGAGTGTCTTGTTGAACTTCGTATGAAAGAAAGTCGCGTTGAAAAGCTCTGGGATGGTGTACAGGATATACCAAATATGAAAAGGATTGTTCTTAATGGATCCAAACAATTGATCGAGATTCCAGATTTATCTAAAGCCTTGAGTCTTCAAGAATTAGAACTCATGGGATGCATAAATTTGCTTTCGGTTCACCCATCAATTTTTTCTCTCCCAAAACTTGTTACGGTGACCCTATGGAATTGCCGAAGGCTTGAGAAACTTCCAGGGTGGTGTGAAGTGAAGAAGGAAGTATTGAGTGAAGCATCAGCATCATCAACATCATCGTGCTCAGGATCATCACATACTTCCCGCTCCAAGCTTCAATACTTAAACTTGGATGGATGTGTGAATCTGATGCATCTGCCAGACAGCTTTTCTAATCTCACCACTCTTAAAGTGCTTTATCTTGGAGGGTGCATAAAGTTAGACGCATCAAATCTATACATCTTATTTGATGCCTTATCTTCTTTAACACAGCTAGACTTGGATCAATGTGATAAGTTGTATGAAATCCCACATAACATCAGCAACTTATCATTGTTAGAGTCGTTATCACTCAGGGAAACTAACGTGAAGAGCATTCCAGAAACCATCAGACACCTTCCACGCCTCAGAAATCTCTACTTAACCAGTTGCACGGTGCTCCGGTCAATGCCTCGAATTCCACCATCCCTCCATTGTTTAACAGCCAATAACTGCAAATCGTTGGAGAGAGTGTTCACTCCAACACCTGAACTACTCCAACAACACCTCGCATTCTACGAAAAGGAGTATTATATTGGAGGCACGGTTTTTTCATTCAGGAATTGCCCAAATTTAAAGAAAGATTCAATTGATGCTATTCGTGAATATGTCAAGTGCTGCAATGAAGAGAAGAGATCAATGAGAGATGCTAGGAGTGTAGGGAATAAGAGAAAGCGTCATTGA	2802	0.3812	MTSSSSSSSSSSTAPQFKYDVFISFRGSDTRCGFFSHLLTALRQKKIHVYVDYNLKEGNEILPALFAAIEQSQIALVIFSKDYASSKWCLEELVKITECQKEKGQIIIPIFYNVEPSEVRHQKRSYAEAFVKHENMKMISRTKSINGELHCRSEEEVVKHILKTLDDMHPAYDFQGLVGINKPVDELESIVFANGSKDIRVIGIWGMGGIGKTTIATVLFNKLCSQYESRHFLANVRKESEKWGIIQLRDKILSVFTDEKDLNIGVPNGVPKHVLRKLRRRKILVVLDDVSTSDQITNLVGGHNWLGPGSRIIVTTRDKHAICKEADDIYKVKALESSDARQLLSLHAFDGTDGHCLELHWHNLVSKMVEYAKGIPLGLKVLGSFLYGKCFEEWECQFQKLQKMPFPEIHNVLRLSYEGLDHQEKSIFLYVACFFKEDEGKDTVENLLDACGYSTSIALKTLQDRALISIQHCVSMHDLIREMGRWIVRQQSINKPGEQRHLWDPHDIHRVLKHREGTDHIESLTWNMSSVSADISLSPHLFARMENLKLLRFYFNNNNNNSSDYYYYYYYCSDNNTCQVHLPEGLEILPQKLRLFHWDNYPAKSFPTTFNAECLVELRMKESRVEKLWDGVQDIPNMKRIVLNGSKQLIEIPDLSKALSLQELELMGCINLLSVHPSIFSLPKLVTVTLWNCRRLEKLPGWCEVKKEVLSEASASSTSSCSGSSHTSRSKLQYLNLDGCVNLMHLPDSFSNLTTLKVLYLGGCIKLDASNLYILFDALSSLTQLDLDQCDKLYEIPHNISNLSLLESLSLRETNVKSIPETIRHLPRLRNLYLTSCTVLRSMPRIPPSLHCLTANNCKSLERVFTPTPELLQQHLAFYEKEYYIGGTVFSFRNCPNLKKDSIDAIREYVKCCNEEKRSMRDARSVGNKRKRH*	934

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy12g2405	933	Gene3D	Ribonuclease Inhibitor	520	718	IPR032675	-
	Ahy12g2405	933	SUPERFAMILY	L domain-like	476	898	-	-
	Ahy12g2405	933	Gene3D	-	13	168	IPR035897	-
	Ahy12g2405	933	Gene3D	-	334	421	IPR042197	-
	Ahy12g2405	933	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	134	IPR035897	-
	Ahy12g2405	933	SMART	till_3	18	168	IPR000157	GO:0007165
	Ahy12g2405	933	Pfam	Leucine Rich Repeat	614	633	IPR011713	-
	Ahy12g2405	933	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	13	811	-	-
	Ahy12g2405	933	Pfam	TIR domain	18	165	IPR000157	GO:0007165
	Ahy12g2405	933	Gene3D	-	169	331	IPR027417	-
	Ahy12g2405	933	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	13	811	IPR044974	GO:0006952
	Ahy12g2405	933	Pfam	NB-ARC domain	182	410	IPR002182	GO:0043531
	Ahy12g2405	933	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	161	430	IPR027417	-
	Ahy12g2405	933	ProSiteProfiles	TIR domain profile.	17	169	IPR000157	GO:0007165
	Ahy12g2405	933	PRINTS	Disease resistance protein signature	201	216	-	-
	Ahy12g2405	933	PRINTS	Disease resistance protein signature	277	291	-	-
	Ahy12g2405	933	PRINTS	Disease resistance protein signature	372	386	-	-
	Ahy12g2405	933	PRINTS	Disease resistance protein signature	777	793	-	-
	Ahy12g2405	933	Gene3D	Ribonuclease Inhibitor	719	919	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy12g2405	Ahy-Chr12	112267067	112273199	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy12g2405	19	853	WRKY Transcription Factor Family	AT4G12020	31.030	6.80e-99	339

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy12g2405	-		-	adu:107475670	1704.49