Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2388 ATGAGTATGAACACTAGTTGTAGCGGAAGCAGCCCTAGTGGTGGTGGTGGTGGTGGAAGCAGTAGTGGTGGTGGCAGCAGCGGTGGCGGTGGCCCTTGTGGGGCTTGCAAATTCTTAAGGAGAAAGTGTGTACCCGGGTGTATATTTGCACCCTACTTTGATTCGGAGCAAGGTGCCACACATTTTGCGGCGGTTCACAAGGTTTTTGGTGCTAGCAATGTTTCAAAGCTTCTCATGAATATTCCAGTTCATAAAAGACTTGATGCTGTTGTCACTATTTGTTATGAAGCTCAAGCAAGACTTAGAGACCCTGTCTATGGCTGCGTTGCTCATATCTTTGCTCTTCAACAACAGATAGTGAATTTACAAGCAGAACTTTCATATTTACAAGGTTATCTTGCAACCCTTGAGTTACCTCATCCGCCACAACCACCTCCTACTCCACCGCAACCAACCCTAGCCCCTCCAACTCTCTCAATTACTGACCTCCCACCTCCACCACCTACTCCTGCCAGCACGGCTACCGTGCCGGCCACGTATGATTTGTCTTCACTCTTTGAACCTATGGCCCAAACTTCTTGGGCCATGCACAATAGGCCCATTGACGCACCACGCCAATTTTTTAGTAGTGGCACATCATCTTTACAGTCTAGTGGTGGCGGCCGCGATGGTGGCGATCTTCAAACACTGGCTCATGAACTTTTGCGTAGACATGGAGTTGATCCTACTACTCCTGTGGCATGTTCTAGTGCCCCCTCATCATCACAATCTCATTCAAAATGA 783 0.484 MSMNTSCSGSSPSGGGGGGSSSGGGSSGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGATHFAAVHKVFGASNVSKLLMNIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQIVNLQAELSYLQGYLATLELPHPPQPPPTPPQPTLAPPTLSITDLPPPPPTPASTATVPATYDLSSLFEPMAQTSWAMHNRPIDAPRQFFSSGTSSLQSSGGGRDGGDLQTLAHELLRRHGVDPTTPVACSSAPSSSQSHSK* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2388 260 MobiDBLite consensus disorder prediction 1 24 - -
Ahy12g2388 260 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 3 239 - -
Ahy12g2388 260 PANTHER LOB DOMAIN CONTAINING PROTEIN 3 239 - -
Ahy12g2388 260 MobiDBLite consensus disorder prediction 246 260 - -
Ahy12g2388 260 MobiDBLite consensus disorder prediction 139 173 - -
Ahy12g2388 260 MobiDBLite consensus disorder prediction 205 223 - -
Ahy12g2388 260 MobiDBLite consensus disorder prediction 205 260 - -
Ahy12g2388 260 ProSiteProfiles LOB domain profile. 31 133 IPR004883 -
Ahy12g2388 260 MobiDBLite consensus disorder prediction 139 176 - -
Ahy12g2388 260 Pfam Lateral organ boundaries (LOB) domain 32 130 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2388 Ahy-Chr12 112013414 112019192 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2388 34 257 AS2 family AT2G45420 60.606 1.46e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy12g2388 LOB 1.00E-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2388 K21994 - qsu:112017957 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2388 12 112013414 112019192 Ahy2g2063 2 95883585 95889736 hybridization
Ahy14g2231 14 122288927 122306964 Ahy12g2388 12 112013414 112019192 PCT
Ahy4g1968 4 111959420 111977654 Ahy12g2388 12 112013414 112019192 PCT
Ahy12g2388 12 112013414 112019192 Ahy14g2231 14 122288927 122306964 PCT
Ahy12g2388 12 112013414 112019192 Ahy4g1968 4 111959420 111977654 PCT