Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2373 ATGCCAAGTCCAAAGACACATCCTTGGAATGCAGCACTTTATCAACTCACTAGATATAAACCTGCCGAATTGAAGGAATGTGCTCAAAATATACATGATCTGTACCTCAGCAGGAGAGGTGGCTCTTTGCAAGCTGTGAGGGAGAAATACAAACAACATAAGGTTTATGATTATCTGATTGATACTGCTGCTCGTGATCAAACAAGAGAGCGCACCAATGAGTTCTTGGAAAGTGTTAAAAGCCATGACCTAGCAAAAGCTGAGATTCTCAACATAATAAACATCAGGCCCACCAACATAGTCGAAATTCCATCACTAGAAGAGTTAGAAGAGTTAGGAAGTAGGTCTTCTGGAGCGAGCAACAAAGAAGCATGA 375 0.4133 MPSPKTHPWNAALYQLTRYKPAELKECAQNIHDLYLSRRGGSLQAVREKYKQHKVYDYLIDTAARDQTRERTNEFLESVKSHDLAKAEILNIINIRPTNIVEIPSLEELEELGSRSSGASNKEA* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2373 124 Pfam Cyclin, C-terminal domain 6 56 IPR004367 -
Ahy12g2373 124 Gene3D - 11 117 IPR038324 -
Ahy12g2373 124 PANTHER CYCLINS 1 55 IPR039361 -
Ahy12g2373 124 SUPERFAMILY HRDC-like 47 106 IPR010997 GO:0000166|GO:0044237
Ahy12g2373 124 Pfam RNA polymerase Rpb4 50 106 IPR005574 GO:0006352|GO:0030880
Ahy12g2373 124 SUPERFAMILY Cyclin-like 6 55 IPR036915 -
Ahy12g2373 124 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 55 - -
Ahy12g2373 124 SMART rpol4neu2 21 119 IPR006590 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2373 Ahy-Chr12 111705342 111707185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2373 4 54 Core Cell Cycle Gene Families AT5G43080 66.667 2.17e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2373 K06627 - ahf:112728288 241.506