Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2305 ATGGAAGATATTCGCTTATTAGTGATAACACTTGTATCATTATCCCTTCTTCTTCAAACCTTTGTTAATGGATATTCTTCAAATGATATTAAACATTGGTGTAGCCAAACACCAAATCCTCAACCATGTGAGTATTTCTTGAGCAATAATCCTAATCACCAAAACAAACCCATCAACCAAAAATCTGATTTTCTCAAGCTTTCATTGCAACTTGCCCAAGAGAGAGCACTCATAGGCCATGCAAACACTGTTTCACTTGGCTCAAAGTGCCGCAACCAACTTGAAAGAGTTGCATGGAATGATTGTGTTGACCTCTATCAACAAACCATTCAAAAGCTCAACAAAACCCTAGACCCTAACACCAAGTGCTCCCAAATTGATGCTCAAACATGGCTTAGCACTGCACTCACAAACCTTGAGACATGCAAAGCTGGCTTCTATGAACTTGGTGTTCAAGATTATGTCCTTCCTCTAATGTCCAACAATGTTACTGAGTTGCTAAGTAACACTTTGGCTCTTAACAACAATGGTGAATCTCATCAAGAGCCAAGTTACAAAAATGGATTCCCAACATGGGTCAAGCCAGGTGATAGAAAATTGCTACAAGCATCTTCTCCGGCATCGCAAGCCAATGTAGTGGTGGCCAAAGACGGATCCGGAAAATACACAACAGTTATGGCAGCCGTAAACGCAGCACCAAAGAGTAGCAGTGGAAGGTATGTGATATATGTGAAGGGAGGGATATACAATGAGCAAGTAGAGATAAAGGCAAATAATATAATGTTGGTGGGAGATGGCATTGGAAAAACCATAATCACCGGCAGCCAAAGTGTGGGAGGAGGCACCACAACCTTCCGTTCTGCCACCGTTGCTGTTACTGGAGATGGATTTATTGCTCAAGGAATCACATTTAGAAACACAGCAGGTGCAGCAAATCATCAAGCTGTTGCATTGCGTTCTGGATCTGACTTATCAGTTTTCTATAAATGTAGTTTCGAAGGTTATCAAGACACATTATATGCTTACTCTGACAGACAATTCTACAGAGAATGTGACATTTATGGCACTGTTGATTTTATCTTTGGTAACGCTGCTGTTGTGTTCCAAAACTGCAACATATATGCAAGAAACCCTCCAAACAAAATCAACACCATCACTGCACATGGCAGAACTGATCCAAACCAAAACACCGGCATTTCCATTCTCAATTGTGTGGTTACAGCTGCATCAGATTTGAAAGCAGTTCAAAGCTCTGTGAAGACATATCTTGGAAGGCCTTGGAAGGAATACTCAAGAACTGTGTTCATGAAGAGTTCTCTTGATAGCTTAATTGATCCAGCAGGTTGGTTGGAATGGAATGGTAACTTTGCATTAACCACATTGTATTATGGAGAGTACATGAACACAGGACTTGGATCTTCAACCGCAAACAGAGTTAAATGGGGAGGTTATCACGTCATAACCAATGCTGCTGAAGCTTCAAAATTCAGTGTTGCAAATTTCATTGCTGGCAACTCATGGCTACCATCCACCCGTGTTCCTTTCACGGCTGGTCTTTAA 1560 0.4122 MEDIRLLVITLVSLSLLLQTFVNGYSSNDIKHWCSQTPNPQPCEYFLSNNPNHQNKPINQKSDFLKLSLQLAQERALIGHANTVSLGSKCRNQLERVAWNDCVDLYQQTIQKLNKTLDPNTKCSQIDAQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTELLSNTLALNNNGESHQEPSYKNGFPTWVKPGDRKLLQASSPASQANVVVAKDGSGKYTTVMAAVNAAPKSSSGRYVIYVKGGIYNEQVEIKANNIMLVGDGIGKTIITGSQSVGGGTTTFRSATVAVTGDGFIAQGITFRNTAGAANHQAVALRSGSDLSVFYKCSFEGYQDTLYAYSDRQFYRECDIYGTVDFIFGNAAVVFQNCNIYARNPPNKINTITAHGRTDPNQNTGISILNCVVTAASDLKAVQSSVKTYLGRPWKEYSRTVFMKSSLDSLIDPAGWLEWNGNFALTTLYYGEYMNTGLGSSTANRVKWGGYHVITNAAEASKFSVANFIAGNSWLPSTRVPFTAGL* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2305 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 176 IPR035513 -
Ahy12g2305 519 SUPERFAMILY Pectin lyase-like 205 518 IPR011050 -
Ahy12g2305 519 ProSitePatterns Pectinesterase signature 1. 236 255 IPR018040 -
Ahy12g2305 519 Gene3D - 206 519 IPR012334 -
Ahy12g2305 519 Pfam Plant invertase/pectin methylesterase inhibitor 29 173 IPR006501 GO:0004857
Ahy12g2305 519 PANTHER PECTINESTERASE 5 518 - -
Ahy12g2305 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 176 IPR035513 -
Ahy12g2305 519 Pfam Pectinesterase 211 505 IPR000070 GO:0030599|GO:0042545
Ahy12g2305 519 SMART PMEI_2 25 173 IPR006501 GO:0004857
Ahy12g2305 519 PANTHER PECTINESTERASE 5 518 - -
Ahy12g2305 519 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 176 IPR006501 GO:0004857
Ahy12g2305 519 ProSitePatterns Pectinesterase signature 2. 353 362 IPR033131 -
Ahy12g2305 519 CDD PMEI-like_3 33 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2305 Ahy-Chr12 110500794 110502805 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2305 1 519 Carbohydrate Esterase AT2G45220 65.511 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2305 K01051 - gmx:100783964 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2305 12 110500794 110502805 Ahy12g2305 12 110500794 110502805 ECH
Ahy12g2305 12 110500794 110502805 Ahy2g1996 2 94735804 94738119 hybridization