Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2301 ATGTCACCTTTTCATTCCCTTGTAATACTCTTGATTCCTTTCCTACTTTCCTCCATTGTTACTTCATATTCATATAATGACCTTAAACTTTGGTGTGGCCAAACACCTAATCCTCAACCATGTGAGTATCTCTTGAGCAAAAACCCTAATCACTTGCACAAACCCATTAAGCGAAAATCTGATTTTCTCAAGCTTTCATTGCAACTTGCTCAAGAGAGAGCACTCATAGGACATGCAAACACTCTTTCACTTGGATCAAAGTGCCGCAACCAACTTGAAAGAGTTGCATGGAATGATTGTGTAGAGCTCTATCAACAAACCATTCAAAAGCTCAACAAAACCCTAGACCCTAACACCAAATGCTCCCAAGTTGATGCCCAAACATGGCTTAGCACTGCTCTCACAAACCTTGAGACATGCAAAGCTGGCTTCTATGAACTTGGTGTTCAAGACTATGTCCTTCCTCTAATGTCCAACAATGTTACTAAGTTGCTAAGCAACACTTTGGCTCTTAACAACAATGGTGAATCTCATCAAGAACCAAGTTACAAAGATGGATTCCCAACATGGGTCAAGCCCGGTGATAGAAAATTGTTGCAAGCATCTTCTCCGGCTTCTAGGGCTAATGTAGTGGTAGCTAAAGATGGATCTGGAAAATACACCACAGTGAATGCTGCCATAAATGCTGCACCAAAGAATAGCAATGGAAGGTATGTGATATATGTGAAGGGTGGGATATACAATGAGCAAGTTGAAATAAAGACAAAGAATATAATGTTGGTCGGAGATGGTATTGGAAAAACCATAATCACAGGTAGCAAAAGTGTTGGAGGTGGCACTACAACCTTTCGTTCAGCCACAGTTGGTAAGTTTTAA 876 0.4053 MSPFHSLVILLIPFLLSSIVTSYSYNDLKLWCGQTPNPQPCEYLLSKNPNHLHKPIKRKSDFLKLSLQLAQERALIGHANTLSLGSKCRNQLERVAWNDCVELYQQTIQKLNKTLDPNTKCSQVDAQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTKLLSNTLALNNNGESHQEPSYKDGFPTWVKPGDRKLLQASSPASRANVVVAKDGSGKYTTVNAAINAAPKNSNGRYVIYVKGGIYNEQVEIKTKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVGKF* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2301 291 Pfam Pectinesterase 209 289 IPR000070 GO:0030599|GO:0042545
Ahy12g2301 291 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
Ahy12g2301 291 Gene3D - 204 290 IPR012334 -
Ahy12g2301 291 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 174 IPR035513 -
Ahy12g2301 291 PANTHER PECTINESTERASE 7 289 - -
Ahy12g2301 291 CDD PMEI-like_3 30 174 - -
Ahy12g2301 291 Pfam Plant invertase/pectin methylesterase inhibitor 28 171 IPR006501 GO:0004857
Ahy12g2301 291 PANTHER PECTINESTERASE 7 289 - -
Ahy12g2301 291 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 174 IPR006501 GO:0004857
Ahy12g2301 291 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 174 IPR035513 -
Ahy12g2301 291 SUPERFAMILY Pectin lyase-like 203 288 IPR011050 -
Ahy12g2301 291 SMART PMEI_2 23 171 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2301 Ahy-Chr12 110436637 110437729 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2301 1 289 Carbohydrate Esterase AT2G45220 58.419 1.37e-120 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2301 K01051 - gmx:100783428 479.559