Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2300 ATGTCACCTTTTCATTCCCTTGTAATACTCTTGATTCCTTTCCTACTTTCCTCCATTGTTACTTCATATTCATATAATGACCTTAAACTTTGGTGTGGCCAAACACCTAATCCTCAACCATGTGAGTATCTCTTGAGCAAAAACCCTAATCACTTGCACAAACCCATTAAGCGAAAATCTGATTTTCTCAAGCTTTCATTGCAACTTGCTCAAGAGAGAGCACTCATAGGACATGCAAACACTCTTTCACTTGGATCAAAGTGCCGCAACCAACTTGAAAGAGTTGCATGGAATGATTGTGTAGAGCTCTATCAACAAACCATTCAAAAGCTCAACAAAACCCTAGACCCTAACACCAAATGCTCCCAAGTTGATGCCCAAACATGGCTTAGCACTGCTCTCACAAACCTTGAGACATGCAAAGCTGGCTTCTATGAACTTGGTGTTCAAGACTATGTCCTTCCTCTAATGTCCAACAATGTTACTAAGTTGCTAAGCAACACTTTGGCTCTTAACAACAATGGTGAATCTCATCAAGAACCAAGTTACAAAGATGGATTCCCAACATGGGTCAAGCCCGGTGATAGAAAATTGTTGCAAGCATCTTCTCCGGCTTCTAGGGCTAATGTAGTGGTAGCTAAAGATGGATCTGGAAAATACACCACAGTGAATGCTGCCATAAATGCTGCACCAAAGAATAGCAATGGAAGGTATGTGATATATGTGAAGGGTGGGATATACAATGAGCAAGTTGAAATAAAGACAAAGAATATAATGTTGGTCGGAGATGGTATTGGAAAAACCATAATCACAGGTAGCAAAAGTGTTGGAGGTGGCACTACAACCTTTCGTTCAGCCACAGTTGCGGTTGTTGGAGATGGATTTATTGCTCAAGATATTACATTCAGGAACACCGCTGGTGCAAAAAATCATCAAGCTGTTGCATTGCGTTCTGGATCAGACTTATCAGTTTTCTACAGATGTAGTTTTGAAGGTTATCAAGACACACTATATGTTCATTCCGAGAGACAATTCTACAAGAATTGCAACATTTATGGAACCGTTGACTTTATATTTGGCAACGCTGCTGTTGTGTTCCAAAACTGTAACATATTTGCAAGAAACCCTCCAAACAAAGTAAACACAATCACAGCACAAGGAAGAACCGATCCAAACCAAAACACTGGCATTTCCATTCACGATTGTAGGGTTACAGCTGCTTCAGATTTGAAACCGGTTCAAAGTTCAGTGAGAACTTATCTTGGAAGACCATGGAAAGAGTATTCAAGAACCGTGTTTATGAAGAGTTTTCTTGATGGTTTGGTTCAACCGGCCGGTTGGATGGAATGGAGTGGTAACTTTGCTTTGAACACGCTTTATTATGGAGAGTATATGAATACTGGACCCGGTTCATCGACTTCAAACCGGGTTAAATGGCGTGGTTATCGTGTTATTAAGACTGCTGCTGAAGCATCGAAATTCACGGTTGGGAATTTCATTGCTGGAAACTCATGGTTACCAGCTACCAAAGTGCCTTTCACCTCAAATCTCTAA 1554 0.4073 MSPFHSLVILLIPFLLSSIVTSYSYNDLKLWCGQTPNPQPCEYLLSKNPNHLHKPIKRKSDFLKLSLQLAQERALIGHANTLSLGSKCRNQLERVAWNDCVELYQQTIQKLNKTLDPNTKCSQVDAQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTKLLSNTLALNNNGESHQEPSYKDGFPTWVKPGDRKLLQASSPASRANVVVAKDGSGKYTTVNAAINAAPKNSNGRYVIYVKGGIYNEQVEIKTKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTAGAKNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYKNCNIYGTVDFIFGNAAVVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHDCRVTAASDLKPVQSSVRTYLGRPWKEYSRTVFMKSFLDGLVQPAGWMEWSGNFALNTLYYGEYMNTGPGSSTSNRVKWRGYRVIKTAAEASKFTVGNFIAGNSWLPATKVPFTSNL* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2300 517 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 174 IPR035513 -
Ahy12g2300 517 Pfam Plant invertase/pectin methylesterase inhibitor 28 171 IPR006501 GO:0004857
Ahy12g2300 517 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 174 IPR035513 -
Ahy12g2300 517 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 174 IPR006501 GO:0004857
Ahy12g2300 517 SUPERFAMILY Pectin lyase-like 203 515 IPR011050 -
Ahy12g2300 517 Gene3D - 204 517 IPR012334 -
Ahy12g2300 517 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Ahy12g2300 517 SMART PMEI_2 23 171 IPR006501 GO:0004857
Ahy12g2300 517 SMART complete 242 420 IPR006633 -
Ahy12g2300 517 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
Ahy12g2300 517 PANTHER PECTINESTERASE 7 515 - -
Ahy12g2300 517 CDD PMEI-like_3 30 174 - -
Ahy12g2300 517 Pfam Pectinesterase 209 503 IPR000070 GO:0030599|GO:0042545
Ahy12g2300 517 PANTHER PECTINESTERASE 7 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2300 Ahy-Chr12 110429163 110431894 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2300 1 517 Carbohydrate Esterase AT2G45220 65.511 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2300 K01051 - gmx:100783428 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2300 12 110429163 110431894 Ahy12g2300 12 110429163 110431894 ECH
Ahy12g2300 12 110429163 110431894 Ahy2g1987 2 94604973 94607516 hybridization