Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2292 ATGTCCGCTTCATCCACAAGTTCCTTTTCACCGGACCAGCAACAACAACTCTCTTCTAACACCGACCAGCTTTGTTATGTCCATTGTAACTTCTGTGACACTGTCCTCGCTGTGAGTGTTCCTTGCACCAGTTTGTTCAAAACTGTCACTGTGAGATGTGGCCATTGCACCAACCTTCTCAGTGTCAACATGCGTGGCCTTCTTCTTCCTTCTTCCAATCAGCTTCACCTTCCTCACTCTTTCTTCACTCCTCAAAACCTTTTGGAGGAGATTCGAAATGCACCATCATCAAACATGATGATGAATCATCATCAGCTTCCAAACCCAAATGATTTGATGATGAGCAACATTAGAGGAGGATCAATAGATCAAGAAACTCCAAAGCCTACTCCACCTGCTGCTAGACCTCCAGAGAAGAGACAGAGAGTTCCATCTGCCTACAACCGCTTCATCAAGGATGAGATCCAACGTATCAAGGCTGGGAATCCTGATATAAGTCATAGAGAAGCCTTCAGTGCTGCTGCAAAGAATTGGGCCCATTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGCCAGGAAGCTGAGGACGTGCTTATGAAAGATGGGTTTTTCTCACCGGCAAATGTAGGTGTCTCTCCCTACTAG 675 0.4563 MSASSTSSFSPDQQQQLSSNTDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPSSNQLHLPHSFFTPQNLLEEIRNAPSSNMMMNHHQLPNPNDLMMSNIRGGSIDQETPKPTPPAARPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEAEDVLMKDGFFSPANVGVSPY* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2292 224 PANTHER PROTEIN YABBY 6-RELATED 2 222 IPR006780 GO:0007275
Ahy12g2292 224 SUPERFAMILY HMG-box 126 182 IPR036910 -
Ahy12g2292 224 MobiDBLite consensus disorder prediction 108 123 - -
Ahy12g2292 224 Pfam YABBY protein 20 188 IPR006780 GO:0007275
Ahy12g2292 224 PANTHER PROTEIN YABBY 4 2 222 - -
Ahy12g2292 224 MobiDBLite consensus disorder prediction 108 145 - -
Ahy12g2292 224 Gene3D High mobility group box domain 122 207 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2292 Ahy-Chr12 110253592 110257510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2292 31 222 C2C2-YABBY Transcription Factor Family AT4G00180 64.115 1.31e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Ahy12g2292 YABBY 1.70E-73 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2292 K25796 - gmx:100781267 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2292 12 110253592 110257510 Ahy2g1977 2 94416392 94420359 hybridization