Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2285 ATGGTGTCGGGTTCAGGGATATGCGCAGCGCGTGTGGTGGTCGACGCGCGGCACCACATGCTCGGTCGTCTTGCGTCGATAGTGGCGAAGGAGCTTCTGAACGGTCAGAAGGTGGTGGTGGTTAGGTGCGAGGAGATCTGCATCTCCGGCGGTCTCGTTAGGCAGAAGATGAAGTACATGCGGTTCCTCCGTAAGAGGATGAACACTAAACCCTCTCATGGCCCCATCCATTTCCGCGCTCCTTCCAAGATCTTCTGGCGCACGGTTCGCGGCATGATTCCTCACAAGACGAAGCGCGGCGAAGCCGCTCTTGCTCGCTTGAAGGTTTTCGAGGGAATCCCTCCTCCTTATGATAAGACGAAGAGGATGGTGATCCCTGATGCTCTCAAGGTTTTGAGGCTTCAGAAGGGGCACAAATTCTGCTTGCTTGGTAGATTGTCATCTGAAGTTGGATGGAATTATTATGATACCATCACGGAATTGGAGAAGAAGAGGAAGGAGAAGGCGCATTTGCTGTACGAGAGAAAGAAGCAGCTGAACAAATTGAGGGTGAAAGCTGAGAAGGTTGCTGAGGAGAAGCTTGGTTCCCAACTTGATATCCTTGCTCCAGTAAAGTACTGA 621 0.5201 MVSGSGICAARVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGEAALARLKVFEGIPPPYDKTKRMVIPDALKVLRLQKGHKFCLLGRLSSEVGWNYYDTITELEKKRKEKAHLLYERKKQLNKLRVKAEKVAEEKLGSQLDILAPVKY* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2285 206 Gene3D Ribosomal protein L13 8 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Ahy12g2285 206 TIGRFAM L13_A_E: ribosomal protein uL13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Ahy12g2285 206 PANTHER RIBOSOMAL PROTEIN L13 1 206 IPR005822 GO:0003735|GO:0005840|GO:0006412
Ahy12g2285 206 PANTHER 60S RIBOSOMAL PROTEIN L13A-4 1 206 - -
Ahy12g2285 206 Pfam Ribosomal protein L13 12 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Ahy12g2285 206 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Ahy12g2285 206 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Ahy12g2285 206 Gene3D - 156 206 - -
Ahy12g2285 206 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Ahy12g2285 206 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2285 Ahy-Chr12 110049854 110050939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2285 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 90.777 2.33e-141 391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2285 12 110049854 110050939 Ahy12g2285 12 110049854 110050939 ECH