Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2272 ATGAAGGCGATGCCCTTTCCTTCTGAGGAATTTCAAGGGAAGGGAGTGTTGGATTTCTCTTCTTCTTATTGTTCTGCGACAGATCTGTTCTCACTGCTTCAGCATCAACAGCAACTTGTTAATAATCATAGTATCCATCAGCCACCACCACCACCACAAGAAGAAGAAGAAAAGTGGAGGAGACGGGAGGAAGAAGAAGAAGAAGAGAACAAAGGCTATGTGGGCTGCACTGAGCCCACATCTGTTCTTGACTCAAGAAGAAGCCAAAGCCCTCCTTCATCCTCCTGCACAATGTCCTCTTCTCTTGGTAGCAGCAACAACAGCACAAGCAAAGGTAGTGCTGCTGGTGGTGGTGGTGGTGGCTGCTCAGCCTCTGCTGCAGCACTAACCTCAGAGAACCCTCTTCCTCCTCCTCCAGAAGGATCCATGGAGAAATGTGGCGGTACAAGAATGATGGATGACTGGGAGGGTCAAGATCAGTCCATTCTGAGGTTAATCATGGGTGATGTTGAGGACCCTTCTGCTGGTTTGACCAAGCTCTTGCAAACTGGCTCTCACAATGTTGATTTCAGTTCGGGAGGGTTTGGTGTTGTGGATCAAGGAGGCTTGATTATGGACCCTTCTGTGCCAGGGAATTATCCTGCTTTCCCATTCCTTGGGGCCGAGAATACGGATGGTCACGTTGCAAAGACCGGTGGGGTTGCTGAACCCATGTTTTCATCCGGTAACAATCCTATGTTAGCCTCCACATCTCCAGCTGCAGGTGTGTTTGGCTCTCAGCAGCCTGTGTTTGGAATTGTGGATGAGAAGCCTCAGGTTATCAACCCTCAGTTTATGATGAATCATAATCAAGTTCAGTTTTCAGAGAATCCTTCATTCTTTGTGCCATTGACATACCCCCAAATGCAAGAGCAACATGTTGTTTACTCTCAGCAACCAGCGAAGCGCCCTCTTTCCGATGCAGCCGTCGGTCACAATTATCAGGTGCCGAGATTACCCCTTTTGGATTCGGGGCAGGAGCAATTTGCTAGGAGGCAGCAGCAGGCCCAGCTTCCTTTGTTTCCTCATCATAGTCAGCAGCAGAAGGTGAGTTCTGCCGGAGACGAGGCGAGCAACCAGCTTCAGCAGGCTATGTTTGACCAGCTTTACAAGACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCTTGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCCCCGATCGGCAAGCCTTTTCAAAGGGCTGCTCTCTACATGAAGGAGGCATTGCAACTACTGCCCCATTCAAACATCTCCAATTTAACGGCTTTCTCACCTATCAGTTTCATATTCAAAGTTGGAGCTTATAAATCATTTTCAGAGATATCACCGGTTCTCCAGTTTGCAAACTTCACCTCTAATCAAGCCCTCATCGAAGCTGTAGAAAGGTTCGATCGAATTCACATTATTGACTTCGATATTGGGTTTGGAGTGCAGTGGTCTTCTTTTATGCAAGAGCTTGCCTTGAGAAATAGCGGTGCATCTTCTCTTAGAGTTACTGCCGTGGTATCGCCCTCAACCTGCGATGAGGTTGAGCTCAGTTTTACAAGAGAGAATTTAAGTCAATATGCAAAAGACATCAACTTATCATTTGAGCTCCATATCTTGAACATCGAATCATTGAGCTCTCCGTCCTTTCCCCTGGCCGGTCAATTCTTCGATAACGAGGCAGTTGCTGTAAATATGCCACTTTCTTGTTTCACTCATCATCCATCGCTGGTTCCATCGGTCCTTCACTTTGTCAAGCAGCTTAGGCCAAAAGTGGTGGTTACTTTGGGCAGGAATTGTGACCGAAACGATGTGCCTCTTCCAACCAAGGTAGTCCATGTTCTTCAATATTACTCGGCCTTGCTCGAGTCGCTTGATGCTGTGAATGTGAACCTAGATGTCCTCCAAAAGATTGAGAAGCACTTCATCCAACCATCTATTAGAAAAGTAATCGTGGGTCACCACCATTATCATTCACAAGAAAAGCTACCTCATTGGAGGAACCTCTTTGCTCAATCAGGATTCTCATCGTTCACATTCAGTAACTTCACAGAAGCTCAAGCAGAATGTCTGGTGCAGCGTGCGCCCGTGCGGGGATTTCAAGTGGATCGAAATCATTCCTCTCTTGTTCTATGCTGGCAGCGAAAAGACCTCGTGTCCGTCTCGCTTTGGAGATGCTAA 2217 0.4745 MKAMPFPSEEFQGKGVLDFSSSYCSATDLFSLLQHQQQLVNNHSIHQPPPPPQEEEEKWRRREEEEEEENKGYVGCTEPTSVLDSRRSQSPPSSSCTMSSSLGSSNNSTSKGSAAGGGGGGCSASAAALTSENPLPPPPEGSMEKCGGTRMMDDWEGQDQSILRLIMGDVEDPSAGLTKLLQTGSHNVDFSSGGFGVVDQGGLIMDPSVPGNYPAFPFLGAENTDGHVAKTGGVAEPMFSSGNNPMLASTSPAAGVFGSQQPVFGIVDEKPQVINPQFMMNHNQVQFSENPSFFVPLTYPQMQEQHVVYSQQPAKRPLSDAAVGHNYQVPRLPLLDSGQEQFARRQQQAQLPLFPHHSQQQKVSSAGDEASNQLQQAMFDQLYKTAELIEAGNPVLAQGILARLNHQLSPIGKPFQRAALYMKEALQLLPHSNISNLTAFSPISFIFKVGAYKSFSEISPVLQFANFTSNQALIEAVERFDRIHIIDFDIGFGVQWSSFMQELALRNSGASSLRVTAVVSPSTCDEVELSFTRENLSQYAKDINLSFELHILNIESLSSPSFPLAGQFFDNEAVAVNMPLSCFTHHPSLVPSVLHFVKQLRPKVVVTLGRNCDRNDVPLPTKVVHVLQYYSALLESLDAVNVNLDVLQKIEKHFIQPSIRKVIVGHHHYHSQEKLPHWRNLFAQSGFSSFTFSNFTEAQAECLVQRAPVRGFQVDRNHSSLVLCWQRKDLVSVSLWRC* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2272 738 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 737 IPR005202 -
Ahy12g2272 738 MobiDBLite consensus disorder prediction 42 148 - -
Ahy12g2272 738 PANTHER GRAS FAMILY TRANSCRIPTION REGULATOR 7 737 - -
Ahy12g2272 738 Pfam GRAS domain family 380 737 IPR005202 -
Ahy12g2272 738 MobiDBLite consensus disorder prediction 50 73 - -
Ahy12g2272 738 ProSiteProfiles GRAS family profile. 369 737 IPR005202 -
Ahy12g2272 738 MobiDBLite consensus disorder prediction 81 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2272 Ahy-Chr12 109784890 109788029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2272 380 738 GRAS Transcription Factor Family AT4G00150 53.463 1.31e-121 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ahy12g2272 GRAS 1.60E-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2272 - - aip:107625898 1331.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2272 12 109784890 109788029 Ahy12g2272 12 109784890 109788029 ECH
Ahy12g2272 12 109784890 109788029 Ahy2g1962 2 94080450 94083572 hybridization